1 files changed, 0 insertions(+), 40 deletions(-)

M gnu/packages/bioinformatics.scm

@@ 21444,46 21444,6 @@ filtered first.  If no annotation entry remains, the entire variant is
 deleted.")
     (license license:expat)))
 
-(define-public python-velocyto
-  (package
-    (name "python-velocyto")
-    (version "0.17.17")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (pypi-uri "velocyto" version))
-       (sha256
-        (base32 "0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs"))
-       (modules '((guix build utils)))
-       ;; Delete generated C files.
-       (snippet '(for-each delete-file
-                           (find-files "." "\\.c")))))
-    (build-system pyproject-build-system)
-    (arguments
-     '(#:phases (modify-phases %standard-phases
-                  ;; Numba needs a writable dir to cache functions.
-                  (add-before 'check 'set-numba-cache-dir
-                    (lambda _
-                      (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
-    (native-inputs (list python-joblib python-setuptools python-wheel))
-    (propagated-inputs (list python-click
-                             python-cython
-                             python-h5py
-                             python-loompy
-                             python-matplotlib
-                             python-numba
-                             python-numpy
-                             python-pandas
-                             python-pysam
-                             python-scikit-learn
-                             python-scipy))
-    (home-page "https://github.com/velocyto-team/velocyto.py")
-    (synopsis "RNA velocity analysis for single cell RNA-seq data")
-    (description
-     "Velocyto is a library for the analysis of RNA velocity.  Velocyto
-includes a command line tool and an analysis pipeline.")
-    (license license:bsd-2)))
-
 (define-public arriba
   (package
     (name "arriba")