~ruther/guix-local: gnu: sra-tools: Update to 2.8.2-1.

79849358f86ca9e49298f3c9f3cf2e964e69ecac — Ricardo Wurmus 9 years ago d5e1716

gnu: sra-tools: Update to 2.8.2-1.

* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.

patch browse .tar.gz

1 files changed, 9 insertions(+), 3 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +9 -3

@@ 4738,7 4738,7 @@ sequence itself can be retrieved from these databases.")
 (define-public sra-tools
   (package
     (name "sra-tools")
-    (version "2.7.0")
+    (version "2.8.2-1")
     (source
      (origin
        (method url-fetch)


@@ 4748,13 4748,19 @@ sequence itself can be retrieved from these databases.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "13paw7bq6y47d2pl0ac5gpgcqp1xsy1g7v1fwysm3hr8lb2dck17"))))
+         "1camsijmvv2s45mb4iyf44ghl4gkd4rl0viphpcgl3ccchy32a0g"))))
     (build-system gnu-build-system)
     (arguments
      `(#:parallel-build? #f ; not supported
        #:tests? #f ; no "check" target
        #:make-flags
-       (list (string-append "VDB_LIBDIR="
+       (list (string-append "DEFAULT_CRT="
+                            (assoc-ref %build-inputs "ncbi-vdb")
+                            "/kfg/certs.kfg")
+             (string-append "DEFAULT_KFG="
+                            (assoc-ref %build-inputs "ncbi-vdb")
+                            "/kfg/default.kfg")
+             (string-append "VDB_LIBDIR="
                             (assoc-ref %build-inputs "ncbi-vdb")
                             ,(if (string-prefix? "x86_64"
                                                  (or (%current-target-system)