From 76ba63a8bd8fddf97c086edec61f1051f319e555 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 9 May 2025 11:10:10 +0200
Subject: [PATCH] gnu: r-ggpicrust2: Update to 2.1.2.

* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 2.1.2.
[propagated-inputs]: Remove r-aldex2, r-circlize, r-deseq2, r-edger, r-ggally, r-lefser,
r-limma, r-maaslin2, r-metagenomeseq, r-microbiomestat, and
r-summarizedexperiment; add r-ggplotify, r-ggraph, r-magrittr,
r-progress, and r-tidygraph.
[native-inputs]: Add r-fgsea, r-ggvenndiagram, r-mockery, and r-upsetr.

Change-Id: I174ff92587f70e46d2c3520c0ff1bbf38e4b8172
---
 gnu/packages/bioconductor.scm | 29 ++++++++++++++---------------
 1 file changed, 14 insertions(+), 15 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 95bff03c7687ba43824f190da5b9438af2f76b24..996ada8fafbb439cb70e11324caed8514fcd1d2c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -15699,36 +15699,35 @@ rectangular layout tree built by ggtree with the grammar of ggplot2.")
 (define-public r-ggpicrust2
   (package
     (name "r-ggpicrust2")
-    (version "1.7.3")
+    (version "2.1.2")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "ggpicrust2" version))
               (sha256
                (base32
-                "0zjlsvzl2f74fvqw4ijnai23qwhlcpgd5p8z9dclnwnsgdbm6hcq"))))
+                "15l3hryw3jz9d7pxvwnsl2h0xms63kyw5fcw2bw8b22w956xj2v9"))))
     (properties `((upstream-name . "ggpicrust2")))
     (build-system r-build-system)
-    (propagated-inputs (list r-aldex2
-                             r-aplot
-                             r-circlize
-                             r-deseq2
+    (propagated-inputs (list r-aplot
                              r-dplyr
-                             r-edger
-                             r-ggally
                              r-ggh4x
                              r-ggplot2
+                             r-ggplotify
                              r-ggprism
-                             r-lefser
-                             r-limma
-                             r-maaslin2
-                             r-metagenomeseq
-                             r-microbiomestat
+                             r-ggraph
+                             r-magrittr
                              r-patchwork
+                             r-progress
                              r-readr
-                             r-summarizedexperiment
                              r-tibble
+                             r-tidygraph
                              r-tidyr))
-    (native-inputs (list r-knitr r-testthat))
+    (native-inputs (list r-fgsea
+                         r-ggvenndiagram
+                         r-knitr
+                         r-mockery
+                         r-testthat
+                         r-upsetr))
     (home-page "https://github.com/cafferychen777/ggpicrust2")
     (synopsis "Make PICRUSt2 output analysis and visualization easier")
     (description