From 7533e089e75b3062b7ad2acd4e140ff6a826043a Mon Sep 17 00:00:00 2001 From: Sharlatan Hellseher Date: Sun, 14 Dec 2025 20:46:12 +0000 Subject: [PATCH] gnu: python-modin: Update to 0.37.1. * gnu/packages/python-science.scm (python-modin): Update to 0.37.1. [arguments] : Rework options. : Remove 'loosen-requirements; add 'versioneer, and 'fix-pytest-config; rework {check} phase to include some API tests scenarios. [propagated-inputs]: Remove python-cloudpickle and python-s3fs; add python-fsspec, python-psutil, and python-typing-extensions. [native-inputs]: Remove python-jinja2, python-lxml, python-matplotlib, python-msgpack, python-openpyxl, python-psutil, python-pyarrow, python-pytest-benchmark, python-pytest-cov, python-scipy, python-sqlalchemy, python-tables, python-tqdm, python-xarray, python-xlrd, and python-wheel; add python-s3fs, python-setuptools, and python-versioneer. Change-Id: I86feaa9f1cd110ed2c430e9816d34da165bccb74 Signed-off-by: Rutherther --- gnu/packages/python-science.scm | 102 ++++++++++++++++++-------------- 1 file changed, 58 insertions(+), 44 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 2afcaf459bd7e5eaab9ac6f877091d9e86aa6a33..47d12c37328c0796be99ea5048f68e87b3cd5d27 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -1586,69 +1586,83 @@ spheres, cubes, etc.") (define-public python-modin (package (name "python-modin") - (version "0.32.0") + (version "0.37.1") (source (origin - ;; The archive on pypi does not include all required files. (method git-fetch) (uri (git-reference (url "https://github.com/modin-project/modin") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 - "1vb3iffgspryb6nvwiwdnypb922vkn2yvyzc1y0wwxcb0c0fl78d")))) + (base32 "1kqdx3b7sb3895ynypb6swf2jly26xvdghqqrm9ahqps16cn9dx9")))) (build-system pyproject-build-system) (arguments (list + ;; tests: + ;; - api: 5 passed + ;; - dask: 269 passed, 2 skipped, 93 xfailed, 191 warnings + ;; - python: 269 passed, 2 skipped, 93 xfailed, 197 warnings #:test-flags #~(list "--numprocesses" (number->string (min 8 (parallel-job-count))) - ;; These four tests fail because an expected error is not raised. - "-k" "not test_binary_bad_broadcast") + ;; AssertionError: assert 'array <...> + "-k" (string-join + (list "not test_repr[100]" + "test_repr[size1]" + "test_repr[size2]" + "test_repr[size3]" + "test_repr[size4]" + "test_repr[size5]" + "test_repr[size6]" + "test_repr[size7]" + "test_repr[size8]" + "test_repr[size9]") + " and not ") + "modin/tests/numpy") #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'loosen-requirements - (lambda _ - (substitute* "setup.py" - ;; Don't depend on a specific version of Pandas. - (("pandas==") "pandas>=")))) - (replace 'check - (lambda* (#:key tests? test-flags #:allow-other-keys) - (when tests? - (setenv "MODIN_ENGINE" "dask") - (apply invoke "python" "-m" "pytest" - "modin/tests/numpy" test-flags) - (setenv "MODIN_ENGINE" "python") - (apply invoke "python" "-m" "pytest" - "modin/tests/numpy" test-flags))))))) + #~(modify-phases %standard-phases + (add-after 'unpack 'versioneer + (lambda _ + (invoke "versioneer" "install") + (substitute* "setup.py" + (("version=versioneer.get_version\\(),") + (string-append "version='" #$version "',"))))) + (add-after 'unpack 'fix-pytest-config + (lambda _ + (substitute* "setup.cfg" + ((" --cov-.*--cov-report=") "")))) + (replace 'check + (lambda* (#:key tests? test-flags #:allow-other-keys) + (when tests? + ;; API basic tests + (invoke "pytest" "-vv" + "modin/tests/test_executions_api.py" + "modin/tests/test_headers.py" + "modin/tests/core/test_dispatcher.py::test_add_option") + ;; More complex engine tests, the complete set up requires + ;; database access and AWS credentials, see: + ;; <.github/workflows/ci.yml >. + (setenv "MODIN_ENGINE" "dask") + (apply invoke "pytest" "-vv" test-flags) + (setenv "MODIN_ENGINE" "python") + (apply invoke "pytest" "-vv" test-flags))))))) + (native-inputs + (list python-boto3 + python-pytest + python-pytest-xdist + python-s3fs + python-setuptools + python-versioneer)) (propagated-inputs - (list python-cloudpickle - python-dask - python-distributed + (list python-fsspec python-numpy python-packaging python-pandas - python-s3fs)) - (native-inputs - (list python-boto3 - python-jinja2 - python-lxml - python-matplotlib - python-msgpack - python-openpyxl python-psutil - python-pyarrow - python-pytest - python-pytest-benchmark - python-pytest-cov - python-pytest-xdist - python-scipy - python-sqlalchemy - python-tables - python-tqdm - python-xarray - python-xlrd - python-wheel)) + python-typing-extensions + ;; [optinoal] + python-dask + python-distributed)) (home-page "https://github.com/modin-project/modin") (synopsis "Make your pandas code run faster") (description