From 70bca483a6f3e1db8d9ee115c264891d2fee0fa6 Mon Sep 17 00:00:00 2001
From: Sharlatan Hellseher <sharlatanus@gmail.com>
Date: Fri, 31 Oct 2025 18:56:45 +0000
Subject: [PATCH] gnu: scvelo: Reduce closure size.

* gnu/packages/bioinformatics.scm (scvelo):
[propagated-inputs]: Remove python-isort.
[native-inputs]: Remove python-black, python-flake8, python-hypothesis,
and python-wheel; add python-setuptools.

Change-Id: Ieefb91cbe3481c64d7d9e5588d934216ef17f974
---
 gnu/packages/bioinformatics.scm | 16 ++++++----------
 1 file changed, 6 insertions(+), 10 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5fe9fd83b247676aea5212bab88bcff88986e041..102c8f5d7f4f414be858169ce0a1fc6d99d5fd31 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -24328,9 +24328,9 @@ aligner.")
              (lambda _
                (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
     (propagated-inputs
-     (list python-anndata
+     (list pybind11     ;XXX: marked as install requirement
+           python-anndata
            python-hnswlib
-           python-isort
            python-igraph
            python-loompy
            python-louvain
@@ -24341,15 +24341,11 @@ aligner.")
            python-scanpy
            python-scikit-learn
            python-scipy
-           python-umap-learn
-           pybind11))
+           python-umap-learn))
     (native-inputs
-     (list python-black
-           python-flake8
-           python-hypothesis
-           python-pytest
-           python-setuptools-scm
-           python-wheel))
+     (list python-pytest
+           python-setuptools
+           python-setuptools-scm))
     (home-page "https://scvelo.org")
     (synopsis "RNA velocity generalized through dynamical modeling")
     (description "ScVelo is a scalable toolkit for RNA velocity analysis in