From 6f1e42cac30f00adbc72d849604a75c07311de6e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sat, 8 Nov 2025 08:16:46 +0100
Subject: [PATCH] gnu: megahit: Add missing header include.

* gnu/packages/bioinformatics.scm (megahit)[arguments]: Add phase 'fix-headers.

Closes guix/guix#3641

Change-Id: I9f8e872e4c6a58c85d05257b5349547063dcf310
---
 gnu/packages/bioinformatics.scm | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 52c229cd5543f1a9ed03b3de38141f1b02179679..1904ca7ce993e4cbe43f88ea8cce164943ceb8e8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -24581,6 +24581,10 @@ both types of files.")
                   (guix build utils))
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-headers
+            (lambda _
+              (substitute* "src/localasm/local_assemble.h"
+                (("#include <string>") "#include <string>\n#include <cstdint>"))))
           (add-after 'unpack 'fix-tests
             (lambda _
               (substitute* "src/megahit"