M gnu/packages/android.scm => gnu/packages/android.scm +2 -0
@@ 56,6 56,7 @@
#:use-module (gnu packages linux)
#:use-module (gnu packages pcre)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
@@ 737,6 738,7 @@ file system.")
"11as7n2mj3nbqsqb3ivyv9985n73i022s748qvjg36cs8ig50afx"))))
(build-system pyproject-build-system)
(inputs (list python-requests python-argcomplete python-urllib3 gnupg))
+ (native-inputs (list python-setuptools python-wheel))
(arguments
(list #:phases #~(modify-phases %standard-phases
(add-before 'build 'patch-gnupg
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +17 -6
@@ 682,6 682,7 @@ memory usage.")
(list python-numpy python-pysam))
(inputs
(list r-minimal))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://wlcb.oit.uci.edu/cpat/")
(synopsis "Alignment-free distinction between coding and noncoding RNA")
(description
@@ 2084,7 2085,7 @@ Format (GFF) with Biopython integration.")
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/simonvh/fluff/")
(synopsis "Analysis and visualization of high-throughput sequencing data")
(description
@@ 2894,6 2895,7 @@ cells).")
(("'argparse',") "")))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-pysam))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/cancerit/parabam")
(synopsis "Parallel BAM File Analysis")
(description "Parabam is a tool for processing sequencing files in
@@ 2962,6 2964,7 @@ encountered in PDB files prior to simulation tasks.")
python-tqdm
python-typing-extensions
python-zipp))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/haessar/peaks2utr")
(synopsis "Python CLI for annotating three prime UTR")
(description
@@ 3325,7 3328,8 @@ features:
python-pandas
python-pysam
python-tqdm))
- (native-inputs (list python-cython python-pytest))
+ (native-inputs (list python-cython python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/KindLab/scDamAndTools")
(synopsis "Functions for processing raw scDam&T-seq data")
(description
@@ 3358,6 3362,7 @@ counts.")
python-numpy
python-pybedtools
python-pysam))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/r3fang/SnapTools")
(synopsis "Tools for processing snap files" )
(description
@@ 3387,6 3392,7 @@ operations:
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-click python-numpy python-pandas
python-parabam python-pysam))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/cancerit/telomerecat")
(synopsis "Telomere computational analysis tool")
(description "Telomerecat is a tool for estimating the average telomere
@@ 5630,7 5636,9 @@ annotations of the genome.")
python-pytest
python-pytest-mock
python-pytest-timeout
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(home-page "https://cutadapt.readthedocs.io/en/stable/")
(synopsis "Remove adapter sequences from nucleotide sequencing reads")
(description
@@ 5925,7 5933,7 @@ accessing bigWig files.")
(("tests/data/" m)
(string-append (getcwd) "/" m))))))))
(propagated-inputs (list python-numpy))
- (native-inputs (list python-nose))
+ (native-inputs (list python-nose python-setuptools python-wheel))
(home-page "https://github.com/brentp/pyfasta/")
(synopsis "Pythonic access to fasta sequence files")
(description
@@ 9189,7 9197,7 @@ experiments.")
(propagated-inputs
(list python-cython python-numpy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/macs3-project/MACS")
(synopsis "Model based analysis for ChIP-Seq data")
(description
@@ 16378,6 16386,7 @@ mapped paired-end sequencing reads.")
python-cython
python-msgpack
python-pysam))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://pypi.org/project/genomic-regions/")
(synopsis "Consistently handle genomic regions")
(description "This package aims to simplify working with genomic region /
@@ 20999,7 21008,9 @@ updated much more frequently.")
python-tqdm))
(native-inputs
(list python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/aertslab/ctxcore")
(synopsis "Core functions for pycisTarget and the SCENIC tool suite")
(description
M gnu/packages/check.scm => gnu/packages/check.scm +17 -4
@@ 1750,8 1750,11 @@ supports coverage of subprocesses.")
(sha256
(base32 "0bdxwaak5clhsd63b9q65nf2amqqv5hfn7dskfakyldxsqnnh0y6"))))
(build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-dotenv))
- (native-inputs (list python-pytest))
(home-page "https://github.com/quiqua/pytest-dotenv")
(synopsis "Automatically detect and load a .env file before running tests")
(description
@@ 1874,8 1877,15 @@ contacting the real http server.")
(base32 "1gw3a33myq9yncjixs3kkcrr1xkjzvvf3xk6x955p3i79wlwkswx"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;no tests included
- (propagated-inputs (list python-attrs python-pytest))
- (native-inputs (list python-pytest python-pytest-cov python-xmlschema))
+ (native-inputs
+ (list python-pytest
+ python-pytest-cov
+ python-setuptools
+ python-wheel
+ python-xmlschema))
+ (propagated-inputs
+ (list python-attrs
+ python-pytest))
(home-page "https://github.com/pytest-dev/pytest-nunit")
(synopsis "Pytest plugin for generating NUnit3 test result XML output")
(description
@@ 3075,12 3085,15 @@ mypy plugins.")
python-pytest-cov
python-pytest-enabler
python-pytest-flake8
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-jaraco-context
python-jaraco-functools
python-more-itertools
python-packaging
+ python-pip
python-pip-run
python-tempora))
(home-page "https://github.com/jaraco/pytest-perf")
M gnu/packages/databases.scm => gnu/packages/databases.scm +3 -1
@@ 671,6 671,7 @@ they exist.")
python-strenum
python-tomlkit
python-typing-extensions))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/RobertCraigie/prisma-client-py")
(synopsis "Fully type-safe database client")
(description
@@ 5722,7 5723,8 @@ mechanism of @code{dogpile}.")
python-pytest-timeout
python-pytest-xdist
python-setuptools
- python-trustme))
+ python-trustme
+ python-wheel))
(home-page "https://datasette.io/")
(synopsis "Multi-tool for exploring and publishing data")
(description "Datasette is a tool for exploring and publishing data.
M gnu/packages/django.scm => gnu/packages/django.scm +6 -2
@@ 191,7 191,7 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
"0dpx2wmcclmd3jkprdljz3makq12vd0sjv3xnvlj5vk1lg7glb7g"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-django))
+ (list python-django python-setuptools python-wheel))
(home-page "https://github.com/epicserve/django-cache-url")
(synopsis "Configure Django cache settings from URLs")
(description
@@ 229,7 229,9 @@ with a @var{CACHE_URL} environment variable.")
python-dj-email-url
python-dj-search-url
python-django-cache-url
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(home-page "https://django-configurations.readthedocs.io/")
(synopsis "Helper module for organizing Django settings")
(description
@@ 755,6 757,7 @@ conn_max_age argument to easily enable Django’s connection pool.")
(base32
"16k91rvd9889xxrrf84a3zb0jpinizhfqdmafn54zxa8kqrf7zsm"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/migonzalvar/dj-email-url")
(synopsis "Configure email settings from URLs")
(description
@@ 775,6 778,7 @@ settings from URLs.")
(base32
"0h7vshhglym6af2pplkyivk6y0g0ncq0xpdzi88kq2sha9c1lka2"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/dstufft/dj-search-url")
(synopsis "Configure Haystack search from URLs")
(description
M gnu/packages/engineering.scm => gnu/packages/engineering.scm +11 -4
@@ 4786,11 4786,18 @@ more.")
"0bazk3k2dyzlrh7yxs4pc76m5ysm7riia3ncg7as3xr4y9dy29bx"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest-asyncio python-pytest-runner python-asynctest
- python-pytest-mock))
+ (list python-asynctest
+ python-pytest-asyncio
+ python-pytest-mock
+ python-pytest-runner
+ python-setuptools
+ python-wheel))
(propagated-inputs
- (list python-aiofiles python-aiosqlite python-cryptography
- python-importlib-metadata python-dateutil python-pytz
+ (list python-aiofiles
+ python-aiosqlite
+ python-cryptography
+ python-dateutil python-pytz
+ python-importlib-metadata
python-sortedcontainers))
(synopsis "OPC UA / IEC 62541 client and server library")
(description "This package provides an OPC UA / IEC 62541 client and
M gnu/packages/games.scm => gnu/packages/games.scm +2 -0
@@ 203,6 203,7 @@
#:use-module (gnu packages protobuf)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-compression)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
@@ 2640,6 2641,7 @@ Every puzzle has a complete solution, although there may be more than one.")
(copy-recursively "examples" examples)))))))
(inputs (list dds `(,python "tk")))
(propagated-inputs (list python-colorama))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/anntzer/redeal")
(synopsis
"Deal generator for bridge card game, written in Python")
M gnu/packages/geo.scm => gnu/packages/geo.scm +15 -3
@@ 1090,6 1090,8 @@ for the @code{OpenStreetMap} Overpass API.")
diffutils
libxml2
python-cram
+ python-setuptools
+ python-wheel
which))
(propagated-inputs
(list python-lxml
@@ 1445,7 1447,10 @@ utilities for data translation and processing.")
;; This test requires internet access.
'(list "--deselect" "test_shapefile.py::test_reader_url")))
(native-inputs
- (list python-pytest python-pytest-runner))
+ (list python-pytest
+ python-pytest-runner
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/GeospatialPython/pyshp")
(synopsis "Read/write support for ESRI Shapefile format")
(description
@@ 1551,7 1556,9 @@ surface (i.e., gridding) with a hint of machine learning.")
python-pytest
python-pytest-cov
python-pytest-mpl
- python-pytest-xdist))
+ python-pytest-xdist
+ python-setuptools
+ python-wheel))
(home-page "https://scitools.org.uk/cartopy/docs/latest/")
(synopsis "Cartographic library for visualisation")
(description
@@ 3367,6 3374,7 @@ path loss.")
;; The tests are speed tests or development tests to compare results with
;; a different library.
(arguments (list #:tests? #false))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/rabuchaim/geoip2fast")
(synopsis
"Fast GeoIP2 country/city/asn lookup library")
@@ 3423,7 3431,11 @@ using third-party geocoders and other data sources.")
(base32
"0inxyj5n4jzgg5xiadqx9sk83gdx5ff989l9s04smdzbd3b8c0c8"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-numpy))
+ (native-inputs
+ (list python-pytest
+ python-numpy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/mapado/haversine")
(synopsis "Calculate the distance between 2 points on Earth")
(description "This package provides functions to calculate the
M gnu/packages/graph.scm => gnu/packages/graph.scm +2 -0
@@ 526,7 526,9 @@ graphs in Python.")
(inputs (list igraph))
(native-inputs
(list python-ddt
+ python-setuptools
python-setuptools-scm
+ python-wheel
pkg-config))
(home-page "https://github.com/vtraag/louvain-igraph")
(synopsis "Implementation of the Louvain algorithm")
M gnu/packages/libusb.scm => gnu/packages/libusb.scm +1 -0
@@ 738,6 738,7 @@ HID-Class devices.")
" '" libhidapi-hidraw.so "',\n"
" '" libhidapi-libusb.so "',\n")))))))))
(inputs (list hidapi))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/apmorton/pyhidapi")
(synopsis "Python @code{ctypes} bindings for HIDAPI library")
(description "Python @code{ctypes} bindings for HIDAPI library.")
M gnu/packages/linux.scm => gnu/packages/linux.scm +2 -1
@@ 4662,7 4662,7 @@ time.")
(string-append
(assoc-ref inputs "kernel-headers") "/include/linux"))))))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/gvalkov/python-evdev")
(synopsis "Bindings to the Linux input handling subsystem")
(description
@@ 5298,6 5298,7 @@ SMBus access.")
(string-append "-L" #$(this-package-input "i2c-tools")
"/lib"))))))))
(inputs (list i2c-tools))
+ (native-inputs (list python-setuptools python-wheel))
(synopsis "I2C/SMBus access for Python")
(description "This package provides a Python library to access
@acronym{I2C, Inter-Integrated Circuit} and @acronym{SMBus, System
M gnu/packages/machine-learning.scm => gnu/packages/machine-learning.scm +32 -14
@@ 183,7 183,7 @@ family of functions.")
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-scipy))
(inputs (list fasttext))
- (native-inputs (list pybind11))))
+ (native-inputs (list pybind11 python-setuptools python-wheel))))
(define-public python-funsor
(package
@@ 210,10 210,12 @@ family of functions.")
python-pytest-xdist
python-requests
python-scipy
+ python-setuptools
python-sphinx
python-sphinx-gallery
python-sphinx-rtd-theme
- python-torchvision))
+ python-torchvision
+ python-wheel))
(home-page "https://github.com/pyro-ppl/funsor")
(synopsis "Tensor-like library for functions and distributions")
(description
@@ 358,7 360,8 @@ classification.")
"-k" "not testJSONConversionBestEffort")))))))
(propagated-inputs
(list python-absl-py python-contextlib2 python-pyyaml python-six))
- (native-inputs (list python-mock python-pytest))
+ (native-inputs (list python-mock python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/google/ml_collections")
(synopsis "Python collections designed for Machine Learning usecases")
(description
@@ 940,6 943,7 @@ depend on language-specific pre- or post-processing.")
(sha256
(base32 "018ilrp41fcclmb5lsml3aijwbmhbq3m7wy65hr1fryj0avic8fr"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/sofiatolaosebikan/hopcroftkarp")
(synopsis "Implementation of the Hopcroft-Karp algorithm")
(description
@@ 965,7 969,8 @@ cardinality matching from a bipartite graph.")
python-numpy
python-scikit-learn
python-scipy))
- (native-inputs (list python-pytest python-pytest-cov))
+ (native-inputs (list python-pytest python-pytest-cov python-setuptools
+ python-wheel))
(home-page "https://persim.scikit-tda.org")
(synopsis "Tools for analyzing persistence diagrams in Python")
(description
@@ 996,7 1001,11 @@ It currently houses implementations of
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-persim python-scikit-learn
python-scipy))
- (native-inputs (list python-cython python-pytest))
+ (native-inputs
+ (list python-cython
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://ripser.scikit-tda.org")
(synopsis "Persistent homology library for Python")
(description
@@ 1779,7 1788,9 @@ computing environments.")
(list python-cython-3
python-pandas
python-pytest
- python-pytest-xdist))
+ python-pytest-xdist
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-numpy python-threadpoolctl python-scipy python-joblib))
(home-page "https://scikit-learn.org/")
@@ 1840,7 1851,8 @@ data analysis.")
python-scikit-learn
python-scipy
python-packaging))
- (native-inputs (list python-pytest python-pytest-cov python-cython))
+ (native-inputs (list python-pytest python-pytest-cov python-cython
+ python-setuptools python-wheel))
(home-page "https://github.com/scikit-learn-contrib/scikit-learn-extra")
(synopsis "Set of tools for scikit-learn")
(description
@@ 1905,7 1917,8 @@ and are compatible with its API.")
python-srsly
python-typing-extensions
python-wasabi))
- (native-inputs (list python-cython python-mock python-pytest))
+ (native-inputs (list python-cython python-mock python-pytest
+ python-setuptools python-wheel))
(home-page "https://github.com/explosion/thinc")
(synopsis "Functional take on deep learning")
(description
@@ 2004,7 2017,9 @@ It is compatible with @code{scikit-learn}.")
python-nose
python-pytest
python-pandas
- python-networkx))
+ python-networkx
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/scikit-learn-contrib/hdbscan")
(synopsis "High performance implementation of HDBSCAN clustering")
(description "HDBSCAN - Hierarchical Density-Based Spatial Clustering of
@@ 2027,7 2042,7 @@ to return meaningful clusters (if there are any).")
(sha256
(base32 "0l5dpdsk5vg7rpay81bncp04119hnl5z7zxjv63jrnm9spcwwi3g"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-importlib-metadata
python-joblib
@@ 2251,7 2266,7 @@ Covariance Matrix Adaptation Evolution Strategy (CMA-ES) for Python.")
(version version)
(build-system pyproject-build-system)
(native-inputs
- (list python-nose python-pytest))
+ (list python-nose python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-future python-numpy))
(synopsis "Efficiently computes derivatives of NumPy code")
@@ 2427,7 2442,8 @@ discrete, and conditional dimensions.")
(setenv "HOME" "/tmp"))))))
;; DeepXDE supported backends are TensorFlow (v1 and v2), PyTorch, JAX and
;; PaddlePaddle. We test with PyTorch because we have it up to date.
- (native-inputs (list python-pytorch python-setuptools-scm))
+ (native-inputs (list python-pytorch python-setuptools
+ python-setuptools-scm python-wheel))
(propagated-inputs (list python-matplotlib python-numpy
python-scikit-learn python-scikit-optimize
python-scipy))
@@ 3652,7 3668,8 @@ in a fast and accurate way.")
(symlink libxgboost (string-append xgbdir "/lib"
"/libxgboost.so"))))))))
(native-inputs
- (list python-pandas python-pytest python-scikit-learn))
+ (list python-pandas python-pytest python-scikit-learn python-setuptools
+ python-wheel))
(inputs
(list xgboost))
(propagated-inputs
@@ 4007,7 4024,7 @@ methodxs at scale on CPU or GPU.")
(add-before 'check 'set-numba-cache-dir
(lambda _
(setenv "NUMBA_CACHE_DIR" "/tmp"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-numba
python-numpy
@@ 5038,6 5055,7 @@ Neural Networks for a wide range of applications related to structured data.")
python-urllib3
python-uvicorn
python-websocket-client))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://lightning.ai")
(synopsis "Lightning Cloud command line client")
(description "This package provides a command line interface for Lightning
M gnu/packages/messaging.scm => gnu/packages/messaging.scm +4 -0
@@ 1177,12 1177,16 @@ simultaneously and therefore appear under the same nickname on IRC.")
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests? (invoke "python" "-m" "unittest" "-v")))))))
+ (native-inputs
+ (list python-setuptools
+ python-wheel))
(inputs
(list glib
glib-networking
libsoup-minimal
python-gssapi
python-idna
+ python-packaging
python-precis-i18n
python-pygobject))
(synopsis "Non-blocking XMPP Module")
M gnu/packages/patool.scm => gnu/packages/patool.scm +4 -2
@@ 69,16 69,18 @@
dpkg
file
flac
- libarchive ;for bsdtar
lhasa
+ libarchive ;for bsdtar
lrzip
lzip
lzop
- python-pytest
p7zip
pbzip2
pigz
plzip
+ python-pytest
+ python-setuptools
+ python-wheel
rpm))
(home-page "https://wummel.github.io/patool/")
(synopsis "Portable archive file manager")
M gnu/packages/potassco.scm => gnu/packages/potassco.scm +4 -0
@@ 629,6 629,7 @@ into Python programs easier.")
;; XXX: Does this cross-compile?
(patch-shebang script)))))))
(propagated-inputs (list python-clingo))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://potassco.org/")
(synopsis "Solve probabilistic logic programs")
(description "This package provides a system to solve probabilistic
@@ 714,6 715,9 @@ as logic programs.")
;; XXX: python-clingo-dl installs clingodl instead…
(("clingo-dl") "clingodl"))))))
(build-system pyproject-build-system)
+ (native-inputs
+ (list python-setuptools
+ python-wheel))
(propagated-inputs
(list python-clingo
python-clingo-dl
M gnu/packages/python-check.scm => gnu/packages/python-check.scm +1 -0
@@ 108,6 108,7 @@
(sha256
(base32 "0cs8xya465wvb9dw0kdl7cvkxwrslhbma66y44r1mmsajcll7imc"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/assertpy/assertpy")
(synopsis "Simple assertion library for unit testing")
(description
M gnu/packages/python-compression.scm => gnu/packages/python-compression.scm +1 -0
@@ 388,6 388,7 @@ and decompression by implementing Python bindings for the ISA-L library.")
"1qiwmavmxy6ba89mrdkzk52hqrd4awnp4yca395pxp2np66pf81g"))))
;; FIXME: Unbundle ls-qpack and xxhash!
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/aiortc/pylsqpack")
(synopsis "Python bindings for @code{ls-qpack}")
(description
M gnu/packages/python-science.scm => gnu/packages/python-science.scm +32 -11
@@ 725,7 725,11 @@ cross-validation.")
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "tdda" "test")))))))
- (native-inputs (list python-numpy python-pandas))
+ (native-inputs
+ (list python-numpy
+ python-pandas
+ python-setuptools
+ python-wheel))
(home-page "https://www.stochasticsolutions.com")
(synopsis "Test-driven data analysis library for Python")
(description
@@ 933,7 937,9 @@ density maps, both for interactive and non-interactive use.")
python-cppheaderparser
python-pytest
python-pyyaml
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs (list python-numpy python-scipy))
(home-page "https://github.com/pyamg/pyamg")
(synopsis "Algebraic Multigrid Solvers in Python")
@@ 1080,6 1086,8 @@ tissue-specificity metrics for gene expression.")
python-pytest
python-pytest-mock
python-pytest-xdist
+ python-setuptools
+ python-wheel
;; Needed to test clipboard support.
xorg-server-for-tests))
(home-page "https://pandas.pydata.org")
@@ 1318,7 1326,9 @@ a convention of suggesting best recommended practices for using
python-numpy
python-pytest
python-pytest-cov
- python-pytest-xdist))
+ python-pytest-xdist
+ python-setuptools
+ python-wheel))
(home-page "https://nalepae.github.io/pandarallel/")
(synopsis "Tool to parallelize Pandas operations across CPUs")
(description
@@ 1465,6 1475,8 @@ production-critical data pipelines or reproducible research settings. With
;; Optional imports. We do not propagate them due to
;; their size.
python-numba ;speedup of joins
+ python-setuptools
+ python-wheel
rdkit)) ;chemistry submodule
(home-page "https://github.com/pyjanitor-devs/pyjanitor")
(synopsis "Tools for cleaning and transforming pandas DataFrames")
@@ 1591,7 1603,8 @@ Python module with the same interface, but (hopefully) faster.")
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest python-pytest-cov))
+ (list python-pytest python-pytest-cov python-setuptools
+ python-wheel))
(home-page "https://github.com/johannfaouzi/pyts")
(synopsis "Python package for time series classification")
(description
@@ 1642,7 1655,8 @@ written in C.")
"01g21v91f4d66xd0bvap0n6d6485w2fnq1636gx6h2s42550rlbd"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-importlib-metadata python-numpy))
- (native-inputs (list python-pytest python-sympy))
+ (native-inputs (list python-pytest python-setuptools python-sympy
+ python-wheel))
(home-page "https://numpoly.readthedocs.io/en/master/")
(synopsis "Polynomials as a numpy datatype")
(description "Numpoly is a generic library for creating, manipulating and
@@ 2169,7 2183,11 @@ annotations on an existing boxplots and barplots generated by seaborn.")
python-numpy
python-sympy))
;; Pint is optional, but we do not propagate it due to its size.
- (native-inputs (list python-pint python-pytest python-setuptools-scm))
+ (native-inputs
+ (list python-pint
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://unyt.readthedocs.io")
(synopsis "Library for working with data that has physical units")
(description
@@ 2993,7 3011,9 @@ to do spectral analysis in Python.")
python-pandas
python-nose
python-pytest
- python-xarray))
+ python-setuptools
+ python-xarray
+ python-wheel))
(home-page "https://github.com/jupyter-widgets/traittypes")
(synopsis "Trait types for NumPy, SciPy and friends")
(description "The goal of this package is to provide a reference
@@ 3267,7 3287,7 @@ science including tools for accessing data sets in Python.")
"12i68jj9n1qj9phjnj6f0kmfhlsd3fqjlk9p6d4gs008azw5m8yn"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy))
- (native-inputs (list pybind11 python-pytest))
+ (native-inputs (list pybind11 python-pytest python-setuptools python-wheel))
(home-page "https://github.com/nschloe/pyfma")
(synopsis "Fused multiply-add for Python")
(description "@code{pyfma} provides an implementation of fused
@@ 3311,7 3331,7 @@ functions, convolutions, artificial neural networks etc.")
" and not TestDatasetOverlayArray"
" and not TestReader"
" and not test_filewriter.py"))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-flit-core))
(inputs (list gdcm libjpeg-turbo))
(propagated-inputs (list python-numpy python-pillow))
(home-page "https://github.com/pydicom/pydicom")
@@ 3357,7 3377,7 @@ data.")
import six
")))))))
(build-system pyproject-build-system)
- (native-inputs (list python-pandas))
+ (native-inputs (list python-pandas python-setuptools python-wheel))
(propagated-inputs (list python-numpy python-scipy python-six
python-tables))
(home-page "https://github.com/uchicago-cs/deepdish")
@@ 3583,7 3603,8 @@ NeuroML2 models.")
" and not test_pr_level_patient"
" and not test_pr_level_series"
" and not test_scp_cancelled"))))
- (native-inputs (list python-pyfakefs python-pytest))
+ (native-inputs (list python-pyfakefs python-pytest python-setuptools
+ python-wheel))
(propagated-inputs (list python-pydicom python-sqlalchemy))
(home-page "https://github.com/pydicom/pynetdicom")
(synopsis "Python implementation of the DICOM networking protocol")
M gnu/packages/python-web.scm => gnu/packages/python-web.scm +21 -12
@@ 222,11 222,13 @@
python-pytest-rerunfailures
python-pytest-vcr
python-pytest-xdist
+ python-setuptools
python-types-requests
python-types-toml
python-types-urllib3
python-typing-extensions
- python-urllib3))
+ python-urllib3
+ python-wheel))
(home-page "https://github.com/huggingface/huggingface_hub")
(synopsis "Client library for accessing the huggingface.co hub")
(description
@@ 330,7 332,9 @@ reusable library for parsing, manipulating, and generating URIs.")
python-pytest-checkdocs
python-pytest-cov
python-pytest-enabler
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/portend")
(synopsis "Monitor TCP ports for bound or unbound states")
(description
@@ 635,7 639,7 @@ using @url{https://github.com/saghul/pycares,pycares}.")
(base32
"1xbfa4gmlmyj6bihdl5p4mr7nd6z79rfi92wcqkmcy4f643frivr"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(inputs (list openssl))
(propagated-inputs
(list python-certifi python-pylsqpack python-pyopenssl))
@@ 1539,6 1543,7 @@ content using a variety of algorithms.")
"138bh6x1yy0qpk63bxa7mxnd97gfdm1fkpwm8wrdz3g3z0fca79c"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-cryptography python-deprecated))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/latchset/jwcrypto")
(synopsis "Implementation of JOSE Web standards")
(description
@@ 1561,7 1566,7 @@ Encryption} (JOSE) Web Standards.")
(base32 "1vinddg8sbh3v9n1r1wmvjx6ydk8xp7scbvhb3csl4y9xz7vhk6g"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-pytest-cov))
+ (list python-pytest python-pytest-cov python-setuptools python-wheel))
(inputs
(list pcre))
(home-page "https://github.com/Kronuz/pyScss")
@@ 1994,7 1999,7 @@ C, yielding parse times that can be a thirtieth of the html5lib parse times.")
"1acd1a4f66gi4plqnsml7cf33qp83mxsnmnqpdwkpj7597xkvyl4"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm))
+ (list python-setuptools python-setuptools-scm python-wheel))
(home-page "https://github.com/sanic-org/html5tagger")
(synopsis "Create HTML documents from Python")
(description
@@ 2463,7 2468,7 @@ cssutils not receiving updates as of 1.0.2.")
"1x4nrvb1p1byi1whmspik7lbh303akdlh762dayfxam3hycsh5kk"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-lxml python-pytest))
+ (list python-lxml python-pytest python-setuptools python-wheel))
(home-page "https://github.com/scrapy/cssselect")
(synopsis "CSS3 selector parser and translator to XPath 1.0")
(description
@@ 3743,7 3748,8 @@ than Python’s urllib2 library.")
(propagated-inputs (list python-cryptography
python-pyspnego
python-requests))
- (native-inputs (list python-pytest python-pytest-mock))
+ (native-inputs (list python-pytest python-pytest-mock python-setuptools
+ python-wheel))
(home-page "https://github.com/requests/requests-kerberos")
(synopsis "Kerberos authentication handler for python-requests")
(description "This package provides a Kerberos authentication handler for
@@ 5822,7 5828,7 @@ for URL parsing and changing.")
"1vbd3ndhmxi8scxgxs6sc7r0rdaliqd80384n06nyb3haqz25inm"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-arrow python-pytz python-requests))
- (native-inputs (list python-requests-mock))
+ (native-inputs (list python-requests-mock python-setuptools python-wheel))
(home-page "https://github.com/ucfopen/canvasapi")
(synopsis "API wrapper for the Canvas LMS")
(description
@@ 7963,6 7969,7 @@ as a Python package.")
;; PyPi sources does not contain tests, recursive dependency on
;; python-sanic.
(list #:tests? #f))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/sanic-org/sanic-routing/")
(synopsis "Routing component for Sanic")
(description "Internal package for @code{python-sanic}, which provides
@@ 7985,6 7992,7 @@ the @code{BasicRouter}.")
;; python-sanic.
(list #:tests? #f))
(propagated-inputs (list python-httpx python-sanic-bootstrap))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/sanic-org/sanic-testing/")
(synopsis "Test clients for Sanic")
(description "Internal package for @code{python-sanic}, which is
@@ 8081,7 8089,7 @@ fast. It allows the usage of the @code{async/await} syntax added in Python
(inherit python-sanic)
(name "python-sanic-bootstrap")
(arguments (list #:tests? #f))
- (native-inputs '())))
+ (native-inputs (list python-setuptools python-wheel))))
(define-public python-socketio
(package
@@ 8617,7 8625,7 @@ GCS, Azure Blob Storage, gzip, bz2, etc.)")
"1cd4b3w5g3pfccsg79kjj27fwi216ip927rjq7isp8pfjzlp8nzd"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/scrapy/w3lib")
(synopsis "Python library of web-related functions")
(description
@@ 8914,7 8922,7 @@ by asyncio.")
python-typing-extensions
python-w3lib))
(native-inputs
- (list python-psutil python-pytest))
+ (list python-psutil python-pytest python-setuptools python-wheel))
(home-page "https://github.com/scrapy/parsel")
(synopsis "Extract data from HTML and XML using XPath and CSS selectors")
(description "Parsel is a library to extract and remove data from
@@ 9717,7 9725,8 @@ hardware on Grid'5000 or via OpenStack, to Vagrant, Chameleon, and more.")
;; Integration tests depend on docker.
(delete-file-recursively "tests/integration"))))))
(propagated-inputs (list python-requests))
- (native-inputs (list python-pytest python-pyyaml python-setuptools-scm))
+ (native-inputs (list python-pytest python-pyyaml python-setuptools
+ python-setuptools-scm python-wheel))
(home-page "https://github.com/netbox-community/pynetbox")
(synopsis "NetBox API client library")
(description "Python module to query and edit data stored in a
M gnu/packages/python-xyz.scm => gnu/packages/python-xyz.scm +74 -34
@@ 1036,7 1036,7 @@ dictionary, can be convert to a dictionary, and is ordered by insertion.")
(base32
"058sah2nyg44xq5wxywlzc3abzcv9fifnlvsflwma9mfp01nw0ab"))))
(build-system pyproject-build-system)
- (native-inputs (list python-poetry-core))
+ (native-inputs (list python-poetry-core python-setuptools))
(home-page "https://github.com/pawelzny/dotty_dict")
(synopsis "Python library for accessing dictionaries using a dot syntax")
(description "This package provides a library that wraps the traditional
@@ 1786,7 1786,7 @@ Markdown. All extensions are found under the module namespace of pymdownx.")
(native-inputs
(list python-pytest python-pytest-benchmark python-pytest-cov
python-pytest-mpl python-pytest-subtests
- python-setuptools-scm))
+ python-setuptools python-setuptools-scm python-wheel))
(propagated-inputs
(list python-typing-extensions
python-uncertainties))
@@ 1893,7 1893,8 @@ the versioning system in PEP 517 build frontends.")
;; This fails because portserver ends up in bin, not site-packages
'(list "--ignore=src/tests/portserver_test.py")))
(propagated-inputs (list python-psutil))
- (native-inputs (list python-pytest net-tools))
+ (native-inputs (list python-pytest python-setuptools python-wheel
+ net-tools))
(home-page "https://github.com/google/python_portpicker")
(synopsis "Choose unique available network ports")
(description
@@ 2282,6 2283,7 @@ of a loop structure or other iterative computation.")
python-requests
python-shellescape
python-webcolors))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/phseiff/github-flavored-markdown-to-html/")
(synopsis "Github-flavored Markdown")
(description
@@ 3040,7 3042,7 @@ concepts.")
(base32 "11pgxsqap9l7jsf52649q9mpj8a0w6p9im929lpr9s26ynnnn6ks"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-h5py python-numpy))
- (native-inputs (list python-nose))
+ (native-inputs (list python-nose python-setuptools python-wheel))
(home-page "https://github.com/frejanordsiek/hdf5storage")
(synopsis "Read and write Python data types from and to HDF5 files")
(description
@@ 3070,6 3072,7 @@ untrusted sources, pickling is avoided in this package.")
(base32
"1qfqnhvfx5mm7bdajjnnagmvns1zxyksjzh3k5la2ag6a8bp5gki"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/hjson/hjson-py")
(synopsis "Python package to parse HJSON documents")
(description "This package provides a Python library and a command-line
@@ 3363,7 3366,7 @@ conventions and aliases in the same expression.")
(("os\\.environ\\.get\\('WAND_MAGICK_LIBRARY_SUFFIX'\\)")
"\".Q16\"")))))))
(native-inputs
- (list python-pytest))
+ (list python-setuptools python-pytest python-wheel))
(inputs
(list imagemagick))
(home-page "https://docs.wand-py.org/")
@@ 5908,7 5911,9 @@ compare, diff, and patch JSON and JSON-like structures in Python.")
python-coveralls
python-pytest
python-pytest-cov
- python-tox))
+ python-setuptools
+ python-tox
+ python-wheel))
(propagated-inputs (list python-pyparsing))
(home-page "https://github.com/shinichi-takii/ddlparse")
(synopsis "Parses and converts DDL to BigQuery JSON schema")
@@ 7388,7 7393,7 @@ software version simply.")
(propagated-inputs
(list python-wrapt))
(native-inputs
- (list python-bumpversion python-pytest))
+ (list python-bumpversion python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tantale/deprecated")
(synopsis "Python decorator to deprecate classes, functions or methods")
(description "The @code{deprecated} decorator provides a convenient way to deprecate
@@ 9025,7 9030,7 @@ color scales, and color space conversion easy. It has support for:
"1ps34laa0kvvp33az173hp5l0hnk8cr0bfqmlgw64ry5cv09qjg0"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-pytest-mock))
+ (list python-pytest python-pytest-mock python-setuptools python-wheel))
(propagated-inputs
(list python-cryptography python-gssapi python-krb5 python-ruamel.yaml))
(home-page "https://github.com/jborean93/pyspnego")
@@ 9574,8 9579,10 @@ tests = True~%" #$(this-package-input "tcl") #$(this-package-input "tk"))))))
python-pytest
python-pytest-timeout
python-pytest-xdist
+ python-setuptools
python-setuptools-scm
- python-setuptools-scm-git-archive))
+ python-setuptools-scm-git-archive
+ python-wheel))
(home-page "https://matplotlib.org/")
(synopsis "2D plotting library for Python")
(description
@@ 9774,6 9781,7 @@ complex-valued functions.")
(list
#:tests? #f)) ; no tests
(propagated-inputs (list python-ply))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "http://senexcanis.com/open-source/cppheaderparser/")
(synopsis
"Parse C++ header files and generate a data structure representing the class")
@@ 9793,6 9801,7 @@ and generate a data structure representing the class.")
(sha256
(base32 "06zysv86j7wqb1rl88ab4clbjf7iahhv9gfyqlasr18hggqkpd43"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/nucleic/cppy")
(synopsis "C++ header library for Python extension modules")
(description "This package is a small C++ header library which makes it
@@ 10377,7 10386,7 @@ retrieve text and metadata from PDFs as well as merge entire files together.")
"--exclude=^test_use_poppler_path_with_trailing_slash$")))
(propagated-inputs (list python-pillow))
(inputs (list poppler))
- (native-inputs (list python-nose which))
+ (native-inputs (list python-nose which python-setuptools python-wheel))
(home-page "https://github.com/Belval/pdf2image")
(synopsis
"Python wrapper around @command{pdftoppm} and @command{pdftocairo}")
@@ 10865,7 10874,9 @@ experimental data and metadata at the Laboratory for Fluorescence Dynamics.")
python-editorconfig
python-numpy
python-pillow
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(inputs
;; XXX: Build is failing with FFmpeg 6.0, unresolved upstream.
;; See https://github.com/PyAV-Org/PyAV/issues/1106
@@ 11292,7 11303,9 @@ any machine that can run Python.")
(list pkg-config
python-cython
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(inputs
(list pango))
(home-page "https://manimpango.manim.community/")
@@ 11777,7 11790,8 @@ older Python versions.")
(build-system pyproject-build-system)
(propagated-inputs
(list python-dataclasses python-smart-open python-typer))
- (native-inputs (list python-mock python-pytest))
+ (native-inputs (list python-mock python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/justindujardin/pathy")
(synopsis "Path interface for local and cloud bucket storage")
(description "Pathy is a python package (with type annotations) for
@@ 12022,7 12036,9 @@ class constructs.")
python-pytest-checkdocs
python-pytest-cov
python-pytest-enabler
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/jaraco.collections")
(synopsis "Provides various collection objects")
(description
@@ 12251,7 12267,9 @@ releases.")
python-pytest-checkdocs
python-pytest-cov
python-pytest-enabler
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/jaraco.text")
(synopsis "Provides various routines for text manipulation")
(description
@@ 13723,7 13741,7 @@ algorithm.")
(sha256
(base32 "01j48np3g50g6insjkszsz0vifwlm6gspria5vdwlkbciywznnhv"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://altgraph.readthedocs.io")
(synopsis "Python graph network package")
(description
@@ 14026,7 14044,9 @@ Python style, together with a fast and comfortable execution environment.")
python-wrapper
python-pytest
python-pandas
- python-requests-mock))))
+ python-requests-mock
+ python-setuptools
+ python-wheel))))
(define-public python-pyqrcode
(package
@@ 15598,6 15618,7 @@ add functionality and customization to your projects with their own plugins.")
(base32 "1zrfr1shin5wyfnfxc7jpk013594wasrp4ni9l70fhjlf2mvb3w7"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none.
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/irgeek/StrEnum")
(synopsis "Enum that inherits from str")
(description "StrEnum is a Python @code{enum.Enum} that inherits from
@@ 15835,6 15856,7 @@ should be stored on various operating systems.")
(base32 "0vm1r1jlaiagj0l9yf7j6zn9w3733dr2169911c0svgrr3gwiwn9"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-six))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/google/pasta")
(synopsis "AST-based Python refactoring library")
(description "This package provides \"pasta\", an AST-based Python
@@ 16388,7 16410,7 @@ designed to efficiently cope with extremely large amounts of data.")
(build-system pyproject-build-system)
(propagated-inputs (list python-deprecated))
(native-inputs (list python-coverage python-coveralls python-nose2
- python-numpy))
+ python-numpy python-setuptools python-wheel))
(home-page "https://github.com/scottgigante/tasklogger")
(synopsis "Extension to the core Python logging library")
(description "This package provides an extension to the core Python
@@ 21618,7 21640,8 @@ underscored string.")
(base32 "1jivws8dsscsmyqngbc71r4qw8qmn98pqmhylz01r5dd1ljfw9bi"))))
(build-system pyproject-build-system)
(inputs (list mit-krb5))
- (native-inputs (list python-cython python-k5test python-pytest))
+ (native-inputs (list python-cython python-k5test python-pytest
+ python-setuptools python-wheel))
(home-page "https://github.com/jborean93/pykrb5")
(synopsis "Kerberos API bindings for Python")
(description "This library provides Python functions that wraps the
@@ 22739,7 22762,8 @@ etc.")
#:test-flags
'(list "--ignore=pymemcache/test/test_compression.py")))
(native-inputs
- (list python-faker python-pytest python-pytest-cov))
+ (list python-faker python-pytest python-pytest-cov python-setuptools
+ python-wheel))
(home-page "https://github.com/pinterest/pymemcache")
(synopsis "Comprehensive, fast, pure Python memcached client")
(description
@@ 23040,7 23064,8 @@ completes.")
(sha256
(base32 "0x57idiy19lzyn32klgm06r223z8gr2aqqk91gysbshq7jg8g3pf"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-pytest-asyncio))
+ (native-inputs (list python-pytest python-pytest-asyncio
+ python-setuptools python-wheel))
(home-page "https://github.com/simonw/asyncinject")
(synopsis
"Run async workflows using pytest-fixtures-style dependency injection")
@@ 23352,6 23377,7 @@ JSON) codec.")
(base32 "16ynrq245c3nywv476izrc4bcacm9gxjzgr67ng91g929ny6bfl4"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/fchollet/namex")
(synopsis
"Separate implementation and public API surface of Python packages")
@@ 23687,6 23713,7 @@ from the header, as well as section details and data available.")
(base32
"0jndjx26p8qibrx997p3kb6vfbqbdxkv74jsrkav177vmx2085b9"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/shibukawa/imagesize_py")
(synopsis "Gets image size of files in various formats in Python")
(description
@@ 25810,7 25837,9 @@ web frameworks.")
python-flex
python-marshmallow
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/rochacbruno/flasgger/")
(synopsis "Extract Swagger specs from your Flask project")
(description "@code{python-flasgger} allows extracting Swagger specs
@@ 26147,7 26176,9 @@ design and layout.")
"15v2mycr7m4ld5wp1sl9flqjjv8zdgc5rkgfz1wxn44d74skixsx"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-wheel))
+ (list python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://code.launchpad.net/~tseaver/pkginfo/trunk")
(synopsis "Query metadatdata from sdists, bdists, and installed packages")
(description
@@ 26261,7 26292,7 @@ interpreter when it prints a stack trace.")
(base32
"0jwy5wwl0rcsgnx7hhq4z7ji3lx271sar4v2a1rmyh5vsj7sn784"))))
(build-system pyproject-build-system)
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools python-setuptools-scm python-wheel))
(propagated-inputs (list python-html5tagger))
(home-page "https://github.com/sanic-org/tracerite")
(synopsis "Human-readable HTML tracebacks")
@@ 26393,6 26424,7 @@ Git.")
(arguments '(#:tests? #f)) ;no tests
(propagated-inputs
(list python-semantic-version python-typing-extensions))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/PyO3/setuptools-rust")
(synopsis "Setuptools plugin for Rust extensions")
(description
@@ 26711,7 26743,7 @@ such as lines length, trailing spaces, indentation, etc.")
(propagated-inputs
(list python-importlib-metadata python-platformdirs python-tomli))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/google/yapf")
(synopsis "Formatter for Python code")
(description "YAPF is a formatter for Python code. It's based off of
@@ 27136,7 27168,9 @@ with PEP 484 argument (and return) type annotations.")
(build-system pyproject-build-system)
(arguments
'())
- (propagated-inputs (list python-typing-extensions))))
+ (propagated-inputs (list python-typing-extensions))
+ (native-inputs (modify-inputs (package-native-inputs python-typeguard)
+ (append python-setuptools python-wheel)))))
(define-public bpython
(package
@@ 28020,7 28054,8 @@ and corruption checks.")
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "pytest")))))))
- (native-inputs (list python-diskcache python-more-itertools python-pytest))
+ (native-inputs (list python-diskcache python-more-itertools
+ python-setuptools python-pytest python-wheel))
(home-page "https://github.com/harlowja/fasteners")
(synopsis "Python package that provides useful locks")
(description
@@ 29711,7 29746,7 @@ and dates in \"human readable\" forms. For example, it would display
"017p9x0bssf7g9slmf30ddh1baawsmxas4nivx334pkfjxp23agr"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-twisted))
+ (list python-pytest python-setuptools python-twisted python-wheel))
(home-page "https://github.com/crossbario/txaio")
(synopsis "Compatibility layer between Python asyncio and Twisted")
(description "Txaio provides a compatibility layer between the Python
@@ 31291,7 31326,7 @@ lowercase.")
(setenv "PYTHONPATH"
(string-append (getcwd) "/code:"
(getenv "GUIX_PYTHONPATH"))))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/drj11/pypng")
(synopsis "Pure Python PNG image encoder/decoder")
(description
@@ 33378,6 33413,7 @@ class.")
python-av
python-numpy
python-pillow))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/damiafuentes/DJITelloPy")
(synopsis
"DJI Tello drone video streaming, swarms and state packets library")
@@ 33478,7 33514,8 @@ EDU SDK. This library has the following features:
(invoke "pycodestyle" "--max-line-length=88"
"git_version.py" "versioneer.py")))))))
(native-inputs
- (list git python-flake8 python-pycodestyle python-pyflakes))
+ (list git python-flake8 python-pycodestyle python-pyflakes
+ python-setuptools python-wheel))
(propagated-inputs
(list python-tomli))
(home-page "https://github.com/python-versioneer/python-versioneer")
@@ 35191,7 35228,7 @@ function implementations based on the types of the arguments.")
(sha256
(base32 "07xv92q7f4bkp6dzkqvcv0zxr11729qdak4s3ldmbhdwgsf44g5h"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/coady/multimethod")
(synopsis "Python support for multiple argument dispatching")
(description
@@ 36003,7 36040,7 @@ Python @code{set} interface.")
python-ruamel.yaml-0.16 python-toml python-tomli))
(native-inputs
(list python-django python-flask python-pytest python-pytest-cov
- python-pytest-mock))
+ python-pytest-mock python-setuptools python-wheel))
(home-page "https://www.dynaconf.com/")
(synopsis "The dynamic configurator for your Python project")
(description
@@ 36180,7 36217,7 @@ of several plugins.")
(arguments (list #:test-flags '(list "-k" "not test_execute")))
(propagated-inputs
(list python-cloudpickle python-importlib-metadata))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://pydoit.org")
(synopsis "Automation tool to execute any kind of task in a build-tools
fashion")
@@ 36234,6 36271,7 @@ to:
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;no tests
(propagated-inputs (list python-doit python-rich-click))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/pydoit/pydevtool")
(synopsis "CLI dev tools powered by pydoit")
(description "This package provides command line tools, powered by pydoit.
@@ 37074,7 37112,7 @@ implementing a pre-defined interface.")
(sha256
(base32 "0j2aw4ipalj208594x80blpgkh1i63gqqa4nb67b823av9hirn11"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-itemadapter python-jmespath python-parsel python-w3lib))
(home-page "https://github.com/scrapy/itemloaders")
@@ 38304,6 38342,7 @@ interfaces.")
(base32 "0fdp90mzy0sd4kyw8kd8kybd1ni765fvqn8hz2wx5sqbjjkm4d5k"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-cffi python-typing-extensions))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/mideind/BinPackage")
(synopsis
"Vocabulary of the modern Icelandic language, in a Python package")
@@ 38356,6 38395,7 @@ with one function call. IceCream makes print debugging a little sweeter.")
(base32 "1ajcjngvr4rlgb0q6p6vjz2sncwhvq3msjy6qaiz5g37vgvw2ij8"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-cffi))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/mideind/Icegrams")
(synopsis "Trigram statistics for Icelandic")
(description
M gnu/packages/rdf.scm => gnu/packages/rdf.scm +1 -0
@@ 468,6 468,7 @@ C++ library as well as various command-line tools to to work with HDT.")
(build-system pyproject-build-system)
(arguments (list #:tests? #f)) ;no test suite
(propagated-inputs (list python-html5lib python-rdflib python-requests))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://www.w3.org/2012/pyRdfa/")
(synopsis "RDFa Python distiller/parser library")
(description "This library can extract RDFa 1.1 from (X)HTML, SVG, or XML.
M gnu/packages/serialization.scm => gnu/packages/serialization.scm +1 -0
@@ 945,6 945,7 @@ game development and other performance-critical applications.")
(sha256
(base32 "11gzc7mhl984248q6abz5rrsph76j0y99mwk24xc90sxpcxr2j59"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://google.github.io/flatbuffers/")
(synopsis "FlatBuffers serialization for Python")
(description "This package provides the @code{FlatBuffers} serialization
M gnu/packages/sourcehut.scm => gnu/packages/sourcehut.scm +2 -0
@@ 74,6 74,7 @@
python-requests
python-sqlalchemy
python-sqlalchemy-utils))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://git.sr.ht/~sircmpwn/core.sr.ht")
(synopsis "Shared code for all sourcehut projects")
(description
@@ 104,6 105,7 @@
(lambda _ (setenv "PKGVER" #$version))))))
(propagated-inputs
(list python-core-sr-ht))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://git.sr.ht/~sircmpwn/scm.sr.ht")
(synopsis "Shared support code for sr.ht source control services")
(description
M gnu/packages/sphinx.scm => gnu/packages/sphinx.scm +10 -2
@@ 179,7 179,11 @@ sources.")
"1rp28jryxwy24y8vpacclqihbizyi6b1s6id86pibvm46ybcmy3v"))))
(propagated-inputs
(modify-inputs (package-propagated-inputs python-sphinx)
- (replace "python-docutils" python-docutils-0.15)))))
+ (replace "python-docutils" python-docutils-0.15)))
+ (native-inputs
+ (modify-inputs (package-native-inputs python-sphinx)
+ (delete python-flit-core)
+ (append python-setuptools python-wheel)))))
(define-public python-sphinxcontrib-apidoc
(package
@@ 238,6 242,7 @@ Apple help books.")
"1jaihs22d8jfvk1fnv5j7hcza89hxj979ib0b4mh130cr53mmicy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-sphinx))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/pradyunsg/sphinx-basic-ng")
(synopsis "Modernised skeleton for Sphinx themes")
(description
@@ 637,7 642,9 @@ integrate Sphinx documents in web templates and to handle searches.")
python-pillow
python-pytest
python-pytest-cov
- python-sphinx))
+ python-setuptools
+ python-sphinx
+ python-wheel))
(home-page "https://sphinx-gallery.github.io/stable/index.html")
(synopsis "Generate an examples gallery automatically")
(description
@@ 732,6 739,7 @@ introspection of @code{zope.interface} instances in code.")
(build-system pyproject-build-system)
(propagated-inputs
(list python-pygments))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://alabaster.readthedocs.io/")
(synopsis "Configurable sidebar-enabled Sphinx theme")
(description "Alabaster is a visually (c)lean, responsive, configurable
M gnu/packages/statistics.scm => gnu/packages/statistics.scm +7 -3
@@ 2469,7 2469,8 @@ inference (VI) algorithms.")
(("\"error::DeprecationWarning\",") "")))))))
(propagated-inputs (list python-importlib-metadata python-numpoly
python-numpy python-scipy))
- (native-inputs (list python-pytest python-scikit-learn))
+ (native-inputs (list python-pytest python-scikit-learn python-setuptools
+ python-wheel))
(home-page "https://chaospy.readthedocs.io/en/master/")
(synopsis "Numerical tool for performing uncertainty quantification")
(description "Chaospy is a numerical toolbox for performing uncertainty
@@ 2593,7 2594,8 @@ Meier, Nelson Aalen and regression.")
#:test-flags
'(list "-k" (string-append "not test_correct_results"
" and not test_correct_results_binary"))))
- (native-inputs (list python-pandas python-pytest))
+ (native-inputs (list python-pandas python-pytest python-setuptools
+ python-wheel))
(propagated-inputs (list python-numpy python-scikit-learn))
(home-page "https://github.com/scikit-learn-contrib/MAPIE")
(synopsis "Module for estimating prediction intervals")
@@ 2621,7 2623,9 @@ conformal prediction methods intervals.")
(native-inputs (list python-coverage
python-pytest
python-pytest-cov
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(home-page "https://emcee.readthedocs.io/en/stable/")
(synopsis "Ensemble sampling toolkit for MCMC")
(description
M gnu/packages/terminals.scm => gnu/packages/terminals.scm +14 -2
@@ 1232,8 1232,14 @@ the terminal. It also supports IPython/Jupyter.")
(substitute* "requirements-dev.txt"
(("(.*)==(.*)$" _ dep ver)
(string-append dep ">=" ver))))))))
+ (native-inputs
+ (list python-coverage
+ python-nose
+ python-pylint
+ python-setuptools
+ python-tox
+ python-wheel))
(propagated-inputs (list python-colorama))
- (native-inputs (list python-coverage python-nose python-pylint python-tox))
(home-page "https://github.com/manrajgrover/py-log-symbols")
(synopsis "Python library with graphical symbols for logging on the terminal")
(description "This package provides a Python library with graphical symbols
@@ 1260,7 1266,13 @@ purposes.")
(substitute* "requirements-dev.txt"
(("(.*)==(.*)$" _ dep ver)
(string-append dep ">=" ver))))))))
- (native-inputs (list python-coverage python-nose python-pylint python-tox))
+ (native-inputs
+ (list python-coverage
+ python-nose
+ python-pylint
+ python-setuptools
+ python-tox
+ python-wheel))
(home-page "https://github.com/manrajgrover/py-spinners")
(synopsis "Python library with graphical spinners for the terminal")
(description "Spinners is a Python library that contains graphical spinners
M gnu/packages/time.scm => gnu/packages/time.scm +5 -1
@@ 159,7 159,11 @@ expressions.")
(call-with-output-file "src/tzdata/zoneinfo/__init__.py"
(const #t)))))))
(inputs (list tzdata))
- (native-inputs (list python-pytest python-pytest-subtests))
+ (native-inputs
+ (list python-pytest
+ python-pytest-subtests
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/python/tzdata")
(synopsis "Python wrapper of IANA time zone data")
(description "This package provides a thin Python wrapper around tzdata.")
M gnu/packages/video.scm => gnu/packages/video.scm +2 -1
@@ 2365,6 2365,7 @@ videoformats depend on the configuration flags of ffmpeg.")
`("PATH" ":" prefix
(,(search-input-file inputs ffm))))))))))
(inputs (list bash-minimal ffmpeg))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/slhck/ffmpeg-progress-yield")
(synopsis "Run an ffmpeg command with progress")
(description "This package allows an ffmpeg command to run with progress.
@@ 2398,7 2399,7 @@ It is usually a complement to @code{ffmpeg-normalize}.")
(ffm (search-input-file inputs "bin/ffmpeg")))
(wrap-program ffn
`("FFMPEG_PATH" = (,ffm)))))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(inputs (list bash-minimal ffmpeg))
(propagated-inputs (list ffmpeg-progress-yield
python-colorama
M gnu/packages/web.scm => gnu/packages/web.scm +5 -1
@@ 2082,7 2082,7 @@ of people.")
(base32
"0ysqylpyv17s52634wn3vrwf7y9b5ig7fdfv8vwj1272lvv68qgk"))))
(build-system pyproject-build-system)
- (native-inputs (list python-nose2))
+ (native-inputs (list python-nose2 python-setuptools python-wheel))
(inputs
(list python-jwcrypto
python-numpy
@@ 5207,11 5207,15 @@ their web site.")
(string-append indent
"os.utime(os.path.join(root, file), (315619200, 315619200))\n"
line))))))))
+ (native-inputs
+ (list python-setuptools
+ python-wheel))
(inputs (list python))
(propagated-inputs
(list python-boto3
python-botocore
python-docutils
+ python-pip
python-six
python-virtualenv))
(home-page "https://github.com/4dn-dcic/python-lambda")