M gnu-system.am => gnu-system.am +1 -0
@@ 550,6 550,7 @@ dist_patch_DATA = \
gnu/packages/patches/polkit-drop-test.patch \
gnu/packages/patches/portaudio-audacity-compat.patch \
gnu/packages/patches/procps-make-3.82.patch \
+ gnu/packages/patches/pt-scotch-build-parallelism.patch \
gnu/packages/patches/pulseaudio-fix-mult-test.patch \
gnu/packages/patches/pulseaudio-longer-test-timeout.patch \
gnu/packages/patches/pycairo-wscript.patch \
M gnu/packages/maths.scm => gnu/packages/maths.scm +8 -8
@@ 2,7 2,7 @@
;;; Copyright © 2013, 2014, 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2014 John Darrington <jmd@gnu.org>
-;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2014 Mathieu Lirzin <mathieu.lirzin@openmailbox.org>
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
@@ 785,15 785,16 @@ implemented in ANSI C, and MPI for communications.")
(define-public scotch
(package
(name "scotch")
- (version "6.0.0")
+ (version "6.0.4")
(source
(origin
(method url-fetch)
- (uri (string-append "https://gforge.inria.fr/frs/download.php/31831/"
+ (uri (string-append "https://gforge.inria.fr/frs/download.php/34618/"
"scotch_" version ".tar.gz"))
(sha256
- (base32 "0yfqf9lk7chb3h42777x42x4adx0v3n0b41q0cdqrdmscp4iczp5"))
- (patches (list (search-patch "scotch-test-threading.patch")))))
+ (base32 "1ir088mvrqggyqdkx9qfynmiaffqbyih5qfl5mga2nrlm1qlsgzm"))
+ (patches (list (search-patch "scotch-test-threading.patch")
+ (search-patch "pt-scotch-build-parallelism.patch")))))
(build-system gnu-build-system)
(inputs
`(("zlib" ,zlib)
@@ 820,7 821,7 @@ CCS = gcc
CCP = mpicc
CCD = gcc
CPPFLAGS =~{ -D~a~}
-CFLAGS = -O2 -g $(CPPFLAGS)
+CFLAGS = -O2 -g -fPIC $(CPPFLAGS)
LDFLAGS = -lz -lm -lrt -lpthread
CP = cp
LEX = flex -Pscotchyy -olex.yy.c
@@ 833,8 834,7 @@ YACC = bison -pscotchyy -y -b y
'("COMMON_FILE_COMPRESS_GZ"
"COMMON_PTHREAD"
"COMMON_RANDOM_FIXED_SEED"
- ;; TODO: Define once our MPI supports
- ;; MPI_THREAD_MULTIPLE
+ ;; XXX: Causes invalid frees in superlu-dist tests
;; "SCOTCH_PTHREAD"
;; "SCOTCH_PTHREAD_NUMBER=2"
"restrict=__restrict")))))
A gnu/packages/patches/pt-scotch-build-parallelism.patch => gnu/packages/patches/pt-scotch-build-parallelism.patch +13 -0
@@ 0,0 1,13 @@
+Building with -j may cause the esmumps_main target to fail with a "no rule for
+dependency libptesmumps.a" error. Fix the dependency name.
+
+--- scotch_6.0.4/src/esmumps/Makefile 2012-12-01 08:29:29.000000000 -0600
++++ scotch_6.0.4/src/esmumps/Makefile 2015-06-15 17:29:23.279605734 -0500
+@@ -160,6 +160,6 @@
+ order.h \
+ symbol.h \
+ esmumps.h \
+- lib$(ESMUMPSLIB)$(LIB) \
++ libesmumps$(LIB) \
+ $(libdir)/lib$(SCOTCHLIB)$(LIB) \
+ $(libdir)/lib$(SCOTCHLIB)errexit$(LIB)
M gnu/packages/patches/scotch-test-threading.patch => gnu/packages/patches/scotch-test-threading.patch +7 -124
@@ 1,139 1,22 @@
-* These tests assume threading support, even when the library is compiled
- without it. Protect these checks.
+Fix this test so that it succeeds when the library is not compiled with
+SCOTCH_PTHREAD.
-* Tests should not require keyboard interaction.
-
---- a/src/check/test_scotch_dgraph_band.c 2012-09-27 10:46:42.000000000 -0500
-+++ b/src/check/test_scotch_dgraph_band.c 2014-05-13 14:36:07.479270243 -0500
-@@ -99,10 +99,12 @@
- errorPrint ("main: Cannot initialize (1)");
- exit (1);
- }
-+#ifdef SCOTCH_PTHREAD
- if (thrdlvlreqval > thrdlvlproval) {
- errorPrint ("main: Cannot initialize (2)");
- exit (1);
- }
-+#endif
-
- if (argc != 2) {
- errorPrint ("main: invalid number of parameters");
-@@ -115,12 +117,14 @@
-
- fprintf (stderr, "Proc %2d of %2d, pid %d\n", proclocnum, procglbnbr, getpid ());
-
-+#ifdef SCOTCH_DEBUG_CHECK2
- if (proclocnum == 0) { /* Synchronize on keybord input */
- char c;
-
- printf ("Waiting for key press...\n");
- scanf ("%c", &c);
- }
-+#endif /* SCOTCH_DEBUG_CHECK2 */
-
- if (MPI_Barrier (proccomm) != MPI_SUCCESS) { /* Synchronize for debug */
- errorPrint ("main: cannot communicate");
---- a/src/check/test_scotch_dgraph_grow.c 2012-11-30 12:19:33.000000000 -0600
-+++ b/src/check/test_scotch_dgraph_grow.c 2014-05-13 14:35:31.307269303 -0500
-@@ -103,10 +103,12 @@
- errorPrint ("main: Cannot initialize (1)");
- exit (1);
- }
-+#ifdef SCOTCH_PTHREAD
- if (thrdlvlreqval > thrdlvlproval) {
- errorPrint ("main: Cannot initialize (2)");
- exit (1);
- }
-+#endif
-
- if (argc != 2) {
- errorPrint ("main: invalid number of parameters");
-@@ -119,12 +121,14 @@
-
- fprintf (stderr, "Proc %2d of %2d, pid %d\n", proclocnum, procglbnbr, getpid ());
-
-+#ifdef SCOTCH_DEBUG_CHECK2
- if (proclocnum == 0) { /* Synchronize on keybord input */
- char c;
-
- printf ("Waiting for key press...\n");
- scanf ("%c", &c);
- }
-+#endif /* SCOTCH_DEBUG_CHECK2 */
-
- if (MPI_Barrier (proccomm) != MPI_SUCCESS) { /* Synchronize for debug */
- errorPrint ("main: cannot communicate");
---- a/src/check/test_scotch_dgraph_redist.c 2012-09-26 11:42:27.000000000 -0500
-+++ b/src/check/test_scotch_dgraph_redist.c 2014-05-13 14:34:30.323267722 -0500
-@@ -98,10 +98,12 @@
- errorPrint ("main: Cannot initialize (1)");
- exit (1);
- }
-+#ifdef SCOTCH_PTHREAD
- if (thrdlvlreqval > thrdlvlproval) {
- errorPrint ("main: Cannot initialize (2)");
- exit (1);
- }
-+#endif
-
- if (argc != 2) {
- errorPrint ("main: invalid number of parameters");
-@@ -114,7 +116,6 @@
-
- fprintf (stderr, "Proc %2d of %2d, pid %d\n", proclocnum, procglbnbr, getpid ());
-
--#define SCOTCH_DEBUG_CHECK2
- #ifdef SCOTCH_DEBUG_CHECK2
- if (proclocnum == 0) { /* Synchronize on keybord input */
- char c;
---- /tmp/nix-build-scotch-6.0.0.drv-9/scotch_6.0.0/src/check/test_common_thread.c 2012-11-30 11:05:23.000000000 -0600
-+++ scotch_6.0.0/src/check/test_common_thread.c 2014-05-13 17:26:27.159535244 -0500
-@@ -90,7 +90,7 @@
- /* */
- /*************************/
-
--#if ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD))
-+#ifdef SCOTCH_PTHREAD
-
- static
- void
-@@ -161,7 +161,7 @@
- return (o);
- }
-
--#endif /* ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) */
-+#endif /* SCOTCH_PTHREAD */
-
- /*********************/
- /* */
+--- scotch_6.0.4/src/check/test_common_thread.c 2014-09-28 11:39:59.000000000 -0500
++++ scotch_6.0.4/src/check/test_common_thread.c 2015-01-10 00:52:00.076229542 -0600
@@ -175,14 +175,14 @@
char * argv[])
{
TestThreadGroup groudat;
-#if ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD))
-+#ifdef SCOTCH_PTHREAD
++#if ((defined COMMON_PTHREAD) && (defined SCOTCH_PTHREAD))
TestThread * restrict thrdtab;
int thrdnbr;
--#endif /* ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) */
-+#endif /* SCOTCH_PTHREAD */
+ #endif /* ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) */
SCOTCH_errorProg (argv[0]);
-#if ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD))
-+#ifdef SCOTCH_PTHREAD
++#if ((defined COMMON_PTHREAD) && (defined SCOTCH_PTHREAD))
thrdnbr = SCOTCH_PTHREAD_NUMBER;
groudat.redusum = COMPVAL (thrdnbr);
-@@ -197,9 +197,9 @@
- errorPrint ("main: cannot launch or run threads");
- return (1);
- }
--#else /* ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) */
-- printf ("Scotch not compiled with either COMMON_PTHREAD or SCOTCH_PTHREAD\n");
--#endif /* ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) */
-+#else /* not SCOTCH_PTHREAD */
-+ printf ("Scotch not compiled with SCOTCH_PTHREAD\n");
-+#endif /* not SCOTCH_PTHREAD */
-
- return (0);
- }