~ruther/guix-local

6ac3bc012fba7b9e9d31c12ce4eae0f4638e3c58 — Sharlatan Hellseher 1 year, 3 months ago aaf4bf1
gnu: python-gpy: Update to 1.13.2.

* gnu/packages/python-science.scm (python-gpy): Update to
1.13.2. Fix build and refresh package style.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I446821dace8cc9c99543f0940e400ca4fc081b08
1 files changed, 31 insertions(+), 23 deletions(-)

M gnu/packages/python-science.scm
M gnu/packages/python-science.scm => gnu/packages/python-science.scm +31 -23
@@ 3754,35 3754,43 @@ for parameterized model creation and handling.  Its features include:
(define-public python-gpy
  (package
    (name "python-gpy")
    (version "1.13.1")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "GPy" version))
              (sha256
               (base32
                "05d1ry4jpp0srsrmp3qd6s0p2bjc4c0z99450pzdr79vagbfvlk4"))))
    (version "1.13.2")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "GPy" version))
       (sha256
        (base32 "083rl8nr4nmmr1pzn0g8gsc4wi9dnhj3jjhkwsssadm5vns5d0m3"))))
    (build-system pyproject-build-system)
    (arguments
     (list
      #:phases
      '(modify-phases %standard-phases
         (add-after 'unpack 'compatibility
           (lambda _
             ;; This file uses Python 2 statements
             (delete-file "GPy/testing/mpi_test__.py")
             (substitute* "setup.py"
               (("scipy>=1.3.0,<1.12.0")
                "scipy>=1.3.0,<=1.13.0"))
             ;; Use numpy.exp because scipy.ext no longer exists
             (substitute* "GPy/kern/src/sde_standard_periodic.py"
               (("sp\\.exp") "np.exp"))
             (substitute* "GPy/kern/src/sde_stationary.py"
               (("sp\\.poly1d") "np.poly1d")
               (("sp\\.roots") "np.roots")))))))
      #~(modify-phases %standard-phases
          (add-after 'unpack 'compatibility
            (lambda _
              ;; This file uses Python 2 statements
              (delete-file "GPy/testing/mpi_test__.py")
              (substitute* "setup.py"
                (("scipy>=1.3.0,<1.12.0")
                 "scipy>=1.3.0,<=1.13.0"))
              ;; Use numpy.exp because scipy.ext no longer exists
              (substitute* "GPy/kern/src/sde_standard_periodic.py"
                (("sp\\.exp") "np.exp"))
              (substitute* "GPy/kern/src/sde_stationary.py"
                (("sp\\.poly1d") "np.poly1d")
                (("sp\\.roots") "np.roots")))))))
    (native-inputs
     (list python-cython python-matplotlib python-pods python-pytest))
     (list python-cython
           python-matplotlib
           python-pods
           python-pytest
           python-setuptools
           python-wheel))
    (propagated-inputs
     (list python-numpy python-paramz python-scipy python-six))
     (list python-numpy
           python-paramz
           python-scipy
           python-six))
    (home-page "https://sheffieldml.github.io/GPy/")
    (synopsis "The Gaussian Process Toolbox")
    (description