@@ 7822,6 7822,49 @@ provided as a matrix which can be used as an offset for different expression
of gene-level counts.")
(license license:gpl2+)))
+(define-public r-rhdf5
+ (package
+ (name "r-rhdf5")
+ (version "2.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "rhdf5" version))
+ (sha256
+ (base32
+ "0pb04li55ysag30s7rap7nnivc0rqmgsmpj43kin0rxdabfn1w0k"))))
+ (build-system r-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'unpack-smallhdf5
+ (lambda* (#:key outputs #:allow-other-keys)
+ (system* "tar" "-xzvf"
+ "src/hdf5source/hdf5small.tgz" "-C" "src/" )
+ (substitute* "src/Makevars"
+ (("^.*cd hdf5source &&.*$") "")
+ (("^.*gunzip -dc hdf5small.tgz.*$") "")
+ (("^.*rm -rf hdf5.*$") "")
+ (("^.*mv hdf5source/hdf5 ..*$") ""))
+ (substitute* "src/hdf5/configure"
+ (("/bin/mv") "mv"))
+ #t)))))
+ (propagated-inputs
+ `(("r-zlibbioc" ,r-zlibbioc)))
+ (inputs
+ `(("perl" ,perl)
+ ("zlib" ,zlib)))
+ (home-page "http://bioconductor.org/packages/rhdf5")
+ (synopsis "HDF5 interface to R")
+ (description
+ "This R/Bioconductor package provides an interface between HDF5 and R.
+HDF5's main features are the ability to store and access very large and/or
+complex datasets and a wide variety of metadata on mass storage (disk) through
+a completely portable file format. The rhdf5 package is thus suited for the
+exchange of large and/or complex datasets between R and other software
+package, and for letting R applications work on datasets that are larger than
+the available RAM.")
+ (license license:artistic2.0)))
+
(define-public emboss
(package
(name "emboss")