From 633c46178fcf407490d56b1110c29cf14044b94a Mon Sep 17 00:00:00 2001 From: Sharlatan Hellseher Date: Tue, 6 Jan 2026 20:53:20 +0000 Subject: [PATCH] gnu: python-pandas-stubs: Update to 2.3.3.251219. * gnu/packages/python-science.scm (python-pandas-stubs): Update to 2.3.3.251219. [arguments]: Drop all but 2 skipped tests. [propagated-inputs]: Add python-numpy. [native-inputs]: Remove python-tables, which, xclip, xorg-server-for-tests, and xsel; add python-beautifulsoup4, python-fsspec, python-html5lib, python-jinja2, python-loguru, python-mypy, python-numexpr, python-openpyxl, python-typing-extensions, python-xlrd, python-xlsxwriter, and tzdata-for-tests. Change-Id: I7b7b85c1ce9b1e575069a79321db4ff515372942 Signed-off-by: Rutherther --- gnu/packages/python-science.scm | 123 ++++++++++++++------------------ 1 file changed, 55 insertions(+), 68 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index a3f8d41d160d3440fecd063086ffb4aa91eb4e1c..584cb740300a147a6346672a72f12e843f553976 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -4072,86 +4072,73 @@ doing practical, real world data analysis in Python.") (name "python-pandas-stubs") ;; The versioning follows that of Pandas and uses the date of the ;; python-pandas-stubs release. - (version "2.2.3.241126") + (version "2.3.3.251219") (source (origin - ;; No tests in the PyPI tarball. (method git-fetch) (uri (git-reference - (url "https://github.com/pandas-dev/pandas-stubs") - (commit (string-append "v" version)))) + (url "https://github.com/pandas-dev/pandas-stubs") + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0xbvin2l7h8vq9g24n4n2l49pdxbi15qghq7zkhh567p3pbmvsyb")))) + (base32 "1xh753wv5dbc59qp7fas323181mlblvhqmd9a4g7zzhaa2mxmzqs")))) (build-system pyproject-build-system) (arguments (list - #:test-flags #~(list "--ignore=tests/test_io.py" ;requires python-calamine - "-k" - (string-append - ;; The python-pyarrow package in Guix is built - ;; with ORC integration, but these tests fail with - ;; an abort in ORC because a timezone file is not - ;; in the expected location: - ;; https://github.com/apache/arrow/issues/40633 - "not test_orc" - " and not test_orc_path" - " and not test_orc_buffer" - " and not test_orc_columns" - " and not test_orc_bytes" - " and not test_all_read_without_lxml_dtype_backend" - - ;; Apparently "numpy.bool_" is not the same as the - ;; expected "bool". - " and not test_timedelta_cmp" - " and not test_timedelta_cmp_rhs" - " and not test_timestamp_cmp" - " and not test_timestamp_eq_ne_rhs")) - #:phases - '(modify-phases %standard-phases - ;; We cannot yet upgrade numpy to 1.26 because numba needs numpy - ;; >1.24. - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "pyproject.toml" - (("numpy = \\{ version = \">=1.26.0\", python = \"<3.13\" \\}") - "numpy = { version = \">=1.23.0\", python = \"<3.13\" }")))) - (add-before 'check 'prepare-x - (lambda _ - (system "Xvfb &") - (setenv "DISPLAY" ":0") - ;; xsel needs to write a log file. - (setenv "HOME" (getcwd))))))) - (propagated-inputs (list python-types-pytz)) - ;; Add python-fastparquet to native inputs once it has been packaged. Its - ;; tests will be skipped for now. - (native-inputs (list python-lxml - python-matplotlib - python-odfpy - python-pandas - python-poetry-core - python-pyarrow - python-pyreadstat - python-pytest - python-scipy - python-sqlalchemy-2 - python-tables - python-tabulate - python-xarray - ;; Needed to test clipboard support. - which - xclip - xorg-server-for-tests - xsel)) + ;; tests: 1619 passed, 12 skipped, 7 deselected + #:test-flags + #~(list + ;; ImportError: Missing optional dependency 'python-calamine'. + "--deselect=tests/test_io.py::test_read_excel" + "--deselect=tests/test_io.py::test_excel_reader"))) + (native-inputs + (list python-beautifulsoup4 + python-fsspec + python-html5lib + python-jinja2 + python-loguru + python-lxml + python-matplotlib + python-mypy + python-numexpr + python-odfpy + python-openpyxl + python-pandas + python-poetry-core + python-pyarrow + python-pyreadstat + python-pytest + python-scipy + python-sqlalchemy-2 + python-tabulate + python-typing-extensions + python-xarray + python-xlrd + python-xlsxwriter + ;; Not packaged yet + ;; + ;; python-calamine + ;; python-poethepoet + ;; python-pyarrow-stubs + ;; python-pyrefly + ;; python-python-calamine + ;; python-pyxlsb + ;; python-scipy-stubs + ;; python-ty + ;; python-types-python-dateutil + tzdata-for-tests)) + (propagated-inputs + (list python-numpy + python-types-pytz)) (home-page "https://pandas.pydata.org") (synopsis "Type annotations for pandas") (description - "This package contains public type stubs for @code{python-pandas}, -following the convention of providing stubs in a separate package, as -specified in @acronym{PEP, Python Enhancement Proposal} 561. The stubs cover -the most typical use cases of @code{python-pandas}. In general, these stubs -are narrower than what is possibly allowed by @code{python-pandas}, but follow -a convention of suggesting best recommended practices for using + "This package contains public type stubs for @code{python-pandas}, following +the convention of providing stubs in a separate package, as specified in +@acronym{PEP, Python Enhancement Proposal} 561. The stubs cover the most +typical use cases of @code{python-pandas}. In general, these stubs are +narrower than what is possibly allowed by @code{python-pandas}, but follow a +convention of suggesting best recommended practices for using @code{python-pandas}.") (license license:bsd-3)))