From 630671d2e8c5f24bd14b7ea581108f76a54b2865 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Sat, 4 Dec 2021 00:21:27 +0100 Subject: [PATCH] gnu: mafft: Replace references to %build-inputs and %outputs. * gnu/packages/bioinformatics.scm (mafft)[arguments]: Replace references to %outputs with a gexp; replace reference to %build-inputs in the 'wrap-programs phase by binding INPUTS. --- gnu/packages/bioinformatics.scm | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9d8a33df3f4e1c7ba1ccf51feb51a0afc048ba67..0c75169d4589730cde10eb4f6f6e5ae0183affb8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5221,10 +5221,9 @@ sequencing tag position and orientation.") (build-system gnu-build-system) (arguments `(#:tests? #f ; no automated tests, though there are tests in the read me - #:make-flags (let ((out (assoc-ref %outputs "out"))) - (list (string-append "PREFIX=" out) - (string-append "BINDIR=" - (string-append out "/bin")))) + #:make-flags ,#~(list (string-append "PREFIX=" #$output) + (string-append "BINDIR=" + (string-append #$output "/bin"))) #:phases (modify-phases %standard-phases (add-after 'unpack 'enter-dir @@ -5264,11 +5263,11 @@ sequencing tag position and orientation.") #t)) (delete 'configure) (add-after 'install 'wrap-programs - (lambda* (#:key outputs #:allow-other-keys) + (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin")) (path (string-append - (assoc-ref %build-inputs "coreutils") "/bin:"))) + (assoc-ref inputs "coreutils") "/bin:"))) (for-each (lambda (file) (wrap-program file `("PATH" ":" prefix (,path))))