~ruther/guix-local

60abbbf8c5c03f57364c0a0a6af3685cc8660772 — Mădălin Ionel Patrașcu 4 years ago aa2aaa6
gnu: Add r-xmapbridge.

* gnu/packages/bioconductor.scm (r-xmapbridge): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
1 files changed, 27 insertions(+), 0 deletions(-)

M gnu/packages/bioconductor.scm
M gnu/packages/bioconductor.scm => gnu/packages/bioconductor.scm +27 -0
@@ 4731,6 4731,33 @@ protein-protein interaction databases and integrative resources such as
molecular functions, respectively, and produces intuitive graphical outputs.")
    (license license:gpl3)))

(define-public r-xmapbridge
  (package
    (name "r-xmapbridge")
    (version "1.52.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "xmapbridge" version))
       (sha256
        (base32 "1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi"))))
    (properties `((upstream-name . "xmapbridge")))
    (build-system r-build-system)
    (home-page "https://git.bioconductor.org/packages/xmapbridge")
    (synopsis "Display numeric data in the web based genome browser X:MAP")
    (description
     "The package @code{xmapbridge} can plot graphs in the X:Map genome
browser.  X:Map uses the Google Maps API to provide a scrollable view of the
genome.  It supports a number of species, and can be accessed at
@url{http://xmap.picr.man.ac.uk}.  This package exports plotting files in a
suitable format.  Graph plotting in R is done using calls to the functions
@code{xmap.plot} and @code{xmap.points}, which have parameters that aim to be
similar to those used by the standard plot methods in R.  These result in data
being written to a set of files (in a specific directory structure) that
contain the data to be displayed, as well as some additional meta-data
describing each of the graphs.")
    (license license:lgpl3)))

(define-public r-xvector
  (package
    (name "r-xvector")