~ruther/guix-local

51ef858c941cd648362a1e98ebeb98bed35cd857 — Mădălin Ionel Patrașcu 3 years ago 7cfc226 
gnu: bpp-core: Update to 2.4.1.

* gnu/packages/bioinformatics.scm (bpp-core): Update to 2.4.1.

[source]: Remove the commit and use the release version. Changed to the github
stored sources.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
patch browse .tar.gz .zip 
1 files changed, 18 insertions(+), 24 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +18 -24
@@ 2220,34 2220,28 @@ easy-to-perform steps.")
    (license license:gpl3+)))

(define-public bpp-core
  ;; The last release was in 2014 and the recommended way to install from source
  ;; is to clone the git repository, so we do this.
  ;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
  (let ((commit "7d8bced0d1a87291ea8dd7046b7fb5ff9c35c582"))
    (package
      (name "bpp-core")
      (version (string-append "2.2.0-1." (string-take commit 7)))
      (source (origin
                (method git-fetch)
                (uri (git-reference
                      (url "http://biopp.univ-montp2.fr/git/bpp-core")
                      (commit commit)))
                (file-name (string-append name "-" version "-checkout"))
                (sha256
                 (base32
                  "10djsq5vlnkilv436gnmh4irpk49v29pa69r6xiryg32xmvn909j"))))
      (build-system cmake-build-system)
      (arguments
       `(#:parallel-build? #f))
      (home-page "http://biopp.univ-montp2.fr")
      (synopsis "C++ libraries for Bioinformatics")
      (description
       "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
  (package
    (name "bpp-core")
    (version "2.4.1")
    (source
      (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/BioPP/bpp-core")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
        (base32 "0ma2cl677l7s0n5sffh66cy9lxp5wycm50f121g8rx85p95vkgwv"))))
    (build-system cmake-build-system)
    (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-core/html/index.html")
    (synopsis "C++ libraries for Bioinformatics")
    (description
     "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics.  It is
Object Oriented and is designed to be both easy to use and computer efficient.
Bio++ intends to help programmers to write computer expensive programs, by
providing them a set of re-usable tools.")
      (license license:cecill-c))))
      (license license:cecill-c)))

(define-public bpp-phyl
  ;; The last release was in 2014 and the recommended way to install from source