From 519a57ba60433c83cc6358fdae991030eb76d860 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 25 Nov 2025 13:50:53 +0100
Subject: [PATCH] gnu: r-tximeta: Update to 1.28.0.

* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.28.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.
[native-inputs]: Add r-rmarkdown.

Change-Id: I3dbc7b55c46db5ce0d39b8e107ac0aa58a25c71c
---
 gnu/packages/bioconductor.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c94bea3c4da0101f06e90bddb1f8fa92b8f10a39..773044278873aebdaa9dd30e10493544ea3952fb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -28917,14 +28917,14 @@ embeddings and functions to build new reference.")
 (define-public r-tximeta
   (package
     (name "r-tximeta")
-    (version "1.26.1")
+    (version "1.28.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "tximeta" version))
        (sha256
         (base32
-         "0za6x4il9qqyrb0rf57vb2qahqdra9snfql6canmpw2ixwhhgq6n"))))
+         "0rpka083c8gw3crd1sp2vhlbk9rbyvnc6r5gnr55am73rp7dk3px"))))
     (properties `((upstream-name . "tximeta")))
     (build-system r-build-system)
     ;; Two tests fail because data files are not included.
@@ -28935,19 +28935,19 @@ embeddings and functions to build new reference.")
            r-biocfilecache
            r-biostrings
            r-ensembldb
-           r-genomeinfodb
            r-genomicfeatures
            r-genomicranges
            r-iranges
            r-jsonlite
            r-matrix
            r-s4vectors
+           r-seqinfo
            r-summarizedexperiment
            r-tibble
            r-txdbmaker
            r-tximport))
     (native-inputs
-     (list r-edger r-knitr r-org-dm-eg-db r-testthat))
+     (list r-edger r-knitr r-org-dm-eg-db r-rmarkdown r-testthat))
     (home-page "https://github.com/mikelove/tximeta")
     (synopsis "Transcript quantification import with automatic metadata")
     (description