1 files changed, 22 insertions(+), 10 deletions(-)

M gnu/packages/bioinformatics.scm

@@ 8134,17 8134,29 @@ exploration.")
 (define-public python-illumina-utils
   (package
     (name "python-illumina-utils")
-    (version "2.12")
-    (source (origin
-              (method url-fetch)
-              (uri (pypi-uri "illumina-utils" version))
-              (sha256
-               (base32
-                "0z9g0prj7pmgl5z4vdpxv3v30grzhc194801qnf0wqzgy7w3aj2s"))))
+    (version "2.13")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/meren/illumina-utils")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "15cyb5slw07va5siq8nzc0nwcgnvx1hmqqrgwk2v0fxy250fp9v4"))))
     (build-system pyproject-build-system)
-    (arguments (list #:tests? #false))  ;there are none
-    (propagated-inputs (list python-matplotlib python-numpy python-levenshtein))
-    (native-inputs (list python-setuptools python-wheel python-pip))
+    (arguments
+     (list
+      #:tests? #f                       ;there are none
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'adjust-requirements
+            (lambda _
+              (substitute* "requirements.txt"
+                (("python-Levenshtein")
+                 "levenshtein")))))))
+    (propagated-inputs (list python-levenshtein python-matplotlib python-numpy))
+    (native-inputs (list python-pip python-setuptools))
     (home-page "https://github.com/meren/illumina-utils")
     (synopsis "Library and scripts to work with Illumina paired-end data")
     (description