From 37b9d1eef75c3084c49169115f5b7afafd0021aa Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Thu, 15 Jan 2026 10:31:46 +0100 Subject: [PATCH] gnu: r-screpertoire: Update to 2.6.2. * gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.6.2. [arguments]: Disable more tests. Change-Id: I0818c1220c08f7a9309f7106e1661ff6ea8a058b Signed-off-by: Rutherther --- gnu/packages/bioconductor.scm | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e1ac348b1e102ac6d12621175deb9f4e1cf8e908..fd67a3322a7b2842967b191c7e9ed43fdfe6f7c7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13563,13 +13563,13 @@ different experiment.") (define-public r-screpertoire (package (name "r-screpertoire") - (version "2.5.8") + (version "2.6.2") (source (origin (method url-fetch) (uri (bioconductor-uri "scRepertoire" version)) (sha256 - (base32 "0ijycpmaivcqqmdc90h5jx8rcwg9112pl2mdpms1hgvww70x3s6w")))) + (base32 "1n8vdia8bsxikl3vfsnafz1i04qn4kqcrchjrbkzrskbl28mkzq5")))) (properties '((upstream-name . "scRepertoire"))) (build-system r-build-system) @@ -13585,14 +13585,14 @@ different experiment.") (string-append m "skip('guix')\n")) ((".*getContigDoublets works for inputs with doublets.*" m) (string-append m "skip('guix')\n"))) - (substitute* "tests/testthat/test-combineContigs.R" - ((".*combineBCR works.*" m) - (string-append m "skip('guix')\n"))) (substitute* "tests/testthat/test-loadContigs.R" ((".*loadContigs correctly auto-detects and processes various formats.*" m) (string-append m "skip('guix')\n")) ((".*loadContigs correctly processes various formats from URL.*" m) (string-append m "skip('guix')\n"))) + ;; There is code running outside of testthat that tries to + ;; download files off the Internet. + (delete-file "tests/testthat/test-combineContigs.R") ;; These fail with: Unknown property set: 'kideraFactors'. (substitute* "tests/testthat/test-positionalProperty.R" ((".*positionalProperty: Output structure is correct.*" m)