From 36c8e3803df81afed41c9905ff2b039836abb68a Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 10 Nov 2025 18:38:43 +0100 Subject: [PATCH] gnu: r-msnbase: Disable two tests. * gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Turn off two more tests in 'delete-bad-tests phase. Change-Id: I9bfa59a09db00e25c7b65cf4d642debfeb377f93 --- gnu/packages/bioconductor.scm | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0d6bc9bc7d63361477fec0d83d53323f0302d4b2..71afa721fec399db652c217f4ebdbf5d189a3870 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11666,6 +11666,15 @@ containers.") (string-append "XML::libxmlFeatures()\n" m))))) (add-after 'unpack 'delete-bad-tests (lambda _ + ;; These tests fail since the upgrade to libxml2 2.14, which + ;; removed transparent decompression. + (with-directory-excursion "tests/testthat/" + (substitute* "test_centroided.R" + ((".*isCentroidedFromFile.*" m) + (string-append m "skip('guix')\n"))) + (substitute* "test_MSnExp.R" + ((".*isolation window.*" m) + (string-append m "skip('guix')\n")))) ;; Needs r-prolocdata (for-each delete-file '("tests/testthat/test_average.R"