@@ 4079,16 4079,16 @@ functions.")
(define-public python-scipy
(package
(name "python-scipy")
- (version "0.16.0")
+ (version "0.18.1")
(source
(origin
(method url-fetch)
-; http://downloads.sourceforge.net/project/scipy/scipy/0.16.1/scipy-0.16.1.tar.gz
- (uri (string-append "mirror://sourceforge/scipy/scipy/" version
- "/scipy-" version ".tar.xz"))
+ (uri (string-append "https://github.com/scipy/scipy/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "0wa0a4skpda3gx7lb12yn19nhbairlyxrvda2lz2bcawk3x5qzz2"))))
+ "17slsrfawjp7if6qrlx03zhgp05350ginxx8ddpw9zqx43x905sn"))))
(build-system python-build-system)
(propagated-inputs
`(("python-numpy" ,python-numpy)
@@ 4098,21 4098,16 @@ functions.")
`(("lapack" ,lapack)
("openblas" ,openblas)))
(native-inputs
- `(("python-nose" ,python-nose)
- ("python-sphinx" ,python-sphinx-1.2.3)
+ `(("python-cython" ,python-cython)
+ ("python-nose" ,python-nose)
+ ("python-sphinx" ,python-sphinx)
("python-numpydoc" ,python-numpydoc)
("gfortran" ,gfortran)
- ("texlive" ,texlive)
("perl" ,perl)))
(outputs '("out" "doc"))
(arguments
`(#:phases
(modify-phases %standard-phases
- (add-after 'unpack 'fix-tests
- (lambda _
- (substitute* "scipy/integrate/tests/test_quadpack.py"
- (("libm.so") "libm.so.6"))
- #t))
(add-before 'build 'configure-openblas
(lambda* (#:key inputs #:allow-other-keys)
(call-with-output-file "site.cfg"
@@ 4132,40 4127,44 @@ atlas_libs = openblas
(assoc-ref inputs "openblas")
(assoc-ref inputs "openblas"))))
#t))
- (delete 'check)
- (add-after 'install 'install-doc
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let* ((data (string-append (assoc-ref outputs "doc") "/share"))
- (doc (string-append data "/doc/" ,name "-" ,version))
- (html (string-append doc "/html"))
- (pyver ,(string-append "PYVER=")))
- ;; Make installed package available for building the
- ;; documentation
- (add-installed-pythonpath inputs outputs)
- (with-directory-excursion "doc"
- ;; Fix generation of images for mathematical expressions.
- (substitute* (find-files "source" "conf\\.py")
- (("pngmath_use_preview = True")
- "pngmath_use_preview = False"))
- (mkdir-p html)
- (system* "make" "html" pyver)
- (system* "make" "latex" "PAPER=a4" pyver)
- (system* "make" "-C" "build/latex" "all-pdf" "PAPER=a4" pyver)
- (copy-file "build/latex/scipy-ref.pdf"
- (string-append doc "/scipy-ref.pdf"))
- (with-directory-excursion "build/html"
- (for-each (lambda (file)
- (let* ((dir (dirname file))
- (tgt-dir (string-append html "/" dir)))
- (install-file file html)))
- (find-files "." ".*"))))
- #t)))
- (add-after 'install-doc 'check
- (lambda _
- ;; Tests can only be run after the library has been installed and not
- ;; within the source directory.
- (with-directory-excursion "/tmp"
- (zero? (system* "python" "-c" "import scipy; scipy.test()"))))))))
+ (add-after 'install 'install-doc
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((data (string-append (assoc-ref outputs "doc") "/share"))
+ (doc (string-append data "/doc/" ,name "-" ,version))
+ (html (string-append doc "/html"))
+ (pyver ,(string-append "PYVER=")))
+ ;; Make installed package available for building the
+ ;; documentation
+ (add-installed-pythonpath inputs outputs)
+ (with-directory-excursion "doc"
+ ;; Fix generation of images for mathematical expressions.
+ (substitute* (find-files "source" "conf\\.py")
+ (("pngmath_use_preview = True")
+ "pngmath_use_preview = False"))
+ (mkdir-p html)
+ (system* "make" "html" pyver)
+ (with-directory-excursion "build/html"
+ (for-each (lambda (file)
+ (let* ((dir (dirname file))
+ (tgt-dir (string-append html "/" dir)))
+ (install-file file html)))
+ (find-files "." ".*")))))
+ #t))
+ (add-after 'unpack 'fix-tests
+ (lambda _
+ (substitute* "scipy/integrate/tests/test_quadpack.py"
+ (("libm.so") "libm.so.6"))
+ #t))
+ ;; Tests can only be run after the library has been installed and not
+ ;; within the source directory.
+ (delete 'check)
+ (add-after 'install 'check
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (add-installed-pythonpath inputs outputs)
+ (with-directory-excursion "/tmp"
+ (zero? (system* "python" "-c"
+ "import scipy; scipy.test('full')")))
+ #t)))))
(home-page "http://www.scipy.org/")
(synopsis "The Scipy library provides efficient numerical routines")
(description "The SciPy library is one of the core packages that make up
@@ 4175,15 4174,8 @@ routines such as routines for numerical integration and optimization.")
(license license:bsd-3)))
(define-public python2-scipy
- (let ((scipy (package-with-python2
- (strip-python2-variant python-scipy))))
- (package (inherit scipy)
- ;; Make sure to use special packages for Python 2 instead
- ;; of those automatically rewritten by package-with-python2.
- (native-inputs
- `(("python2-sphinx" ,python2-sphinx-1.2.3)
- ,@(fold alist-delete (package-native-inputs scipy)
- '("python-sphinx")))))))
+ (package-with-python2
+ (strip-python2-variant python-scipy)))
(define-public python-socksipy-branch
(package