@@ 28581,6 28581,49 @@ algorithms; density clustering, hierarchical clustering, k-means, and the
discovery of differentially expressed genes and markers.")
(license license:gpl3)))
+(define-public r-seuratdisk
+ (let ((commit "163f1aade5bac38ed1e9e9c912283a7e74781610")
+ (revision "1"))
+ (package
+ (name "r-seuratdisk")
+ (version (git-version "0.0.0.9019" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/mojaveazure/seurat-disk")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1d1v8qi6kknzy5fj6bl8akwy74h5h143i00lyidsnqjbwp9n4qnw"))))
+ (properties `((upstream-name . "SeuratDisk")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cli" ,r-cli)
+ ("r-crayon" ,r-crayon)
+ ("r-hdf5r" ,r-hdf5r)
+ ("r-matrix" ,r-matrix)
+ ("r-r6" ,r-r6)
+ ("r-rlang" ,r-rlang)
+ ("r-seurat" ,r-seurat)
+ ("r-seuratobject" ,r-seuratobject)
+ ("r-stringi" ,r-stringi)
+ ("r-withr" ,r-withr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/mojaveazure/seurat-disk")
+ (synopsis "Interfaces for HDF5-based single cell file formats")
+ (description
+ "The h5Seurat file format is specifically designed for the storage and
+analysis of multi-modal single-cell and spatially-resolved expression
+experiments, for example, from CITE-seq or 10X Visium technologies. It holds
+all molecular information and associated metadata, including (for example)
+nearest-neighbor graphs, dimensional reduction information, spatial
+coordinates and image data, and cluster labels. This package also supports
+rapid and on-disk conversion between h5Seurat and AnnData objects, with the
+goal of enhancing interoperability between Seurat and Scanpy.")
+ (license license:gpl3))))
+
(define-public r-phangorn
(package
(name "r-phangorn")