~ruther/guix-local

30474f25d0c85c2604003ffa7bcef396f58d97a9 — Ricardo Wurmus 4 years ago 7850856 
gnu: python-numcodecs: Unbundle c-blosc.

* gnu/packages/python-xyz.scm (python-numcodecs)[source]: Add snippet to
remove bundled c-blosc sources and pre-built Cython files.
[arguments]: Add build phase 'disable-avx2 and 'unbundle; replace 'check phase
to run pytest; disable tests.
[inputs]: Add c-blosc, lz4, zlib, and zstd.
[native-inputs]: Add python-cython.
patch browse .tar.gz .zip 
1 files changed, 42 insertions(+), 2 deletions(-)

M gnu/packages/python-xyz.scm

M gnu/packages/python-xyz.scm => gnu/packages/python-xyz.scm +42 -2
@@ 22098,13 22098,53 @@ tool).")
       (uri (pypi-uri "numcodecs" version))
       (sha256
        (base32
         "0kbfr8pl3x9glsypbq8hzim003f16ml1b1cvgrh4w1sdvgal6j7g"))))
         "0kbfr8pl3x9glsypbq8hzim003f16ml1b1cvgrh4w1sdvgal6j7g"))
       (modules '((guix build utils)))
       (snippet
        '(begin
           (delete-file-recursively "c-blosc")
           (for-each delete-file '("numcodecs/blosc.c"
                                   "numcodecs/compat_ext.c"
                                   "numcodecs/lz4.c"
                                   "numcodecs/vlen.c"
                                   "numcodecs/zstd.c"))))))
    (build-system python-build-system)
    (arguments
     `(#:tests? #false ; TODO: unclear why numcodecs.* are not found
       #:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'disable-avx2
           (lambda _
             (setenv "DISABLE_NUMCODECS_AVX2" "1")))
         (add-after 'unpack 'unbundle
           (lambda _
             (substitute* "setup.py"
               (("sources=sources \\+ blosc_sources,")
                "sources=sources,")
               (("extra_compile_args=extra_compile_args")
                "extra_compile_args=list(base_compile_args)")
               (("'numcodecs.zstd',")
                "'numcodecs.zstd', libraries=['zstd'], ")
               (("'numcodecs.lz4',")
                "'numcodecs.lz4', libraries=['lz4'], ")
               (("'numcodecs.blosc',")
                "'numcodecs.blosc', libraries=['blosc'], "))))
         (replace 'check
           (lambda* (#:key tests? inputs outputs #:allow-other-keys)
             (when tests?
               (add-installed-pythonpath inputs outputs)
               (invoke "pytest" "-vv")))))))
    (inputs
     `(("c-blosc" ,c-blosc)
       ("lz4" ,lz4)
       ("zlib" ,zlib)
       ("zstd" ,zstd "lib")))
    (propagated-inputs
     `(("python-numpy" ,python-numpy)
       ("python-msgpack" ,python-msgpack)))
    (native-inputs
     `(("python-pytest" ,python-pytest)
     `(("python-cython" ,python-cython)
       ("python-pytest" ,python-pytest)
       ("python-setuptools-scm" ,python-setuptools-scm)))
    (home-page "https://github.com/zarr-developers/numcodecs")
    (synopsis "Buffer compression and transformation codecs")