~ruther/guix-local

2e4ce60e7ce78c2aeb6d2921a99728f83e0d3563 — Ricardo Wurmus 8 years ago 4272000
gnu: Add r-gwascat.

* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
1 files changed, 40 insertions(+), 0 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +40 -0
@@ 10080,6 10080,46 @@ grid graphics package.  This results in genomic information plotted together
with your data.")
    (license license:artistic2.0)))

(define-public r-gwascat
  (package
    (name "r-gwascat")
    (version "2.10.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "gwascat" version))
       (sha256
        (base32
         "0n5x5i5v6a8wpn5mxmlpkl34b4kyypmymiwww6g61zch7xqrgywi"))))
    (build-system r-build-system)
    (propagated-inputs
     `(("r-annotationdbi" ,r-annotationdbi)
       ("r-annotationhub" ,r-annotationhub)
       ("r-biocgenerics" ,r-biocgenerics)
       ("r-biostrings" ,r-biostrings)
       ("r-genomeinfodb" ,r-genomeinfodb)
       ("r-genomicfeatures" ,r-genomicfeatures)
       ("r-genomicranges" ,r-genomicranges)
       ("r-ggbio" ,r-ggbio)
       ("r-ggplot2" ,r-ggplot2)
       ("r-gqtlstats" ,r-gqtlstats)
       ("r-graph" ,r-graph)
       ("r-gviz" ,r-gviz)
       ("r-homo-sapiens" ,r-homo-sapiens)
       ("r-iranges" ,r-iranges)
       ("r-rsamtools" ,r-rsamtools)
       ("r-rtracklayer" ,r-rtracklayer)
       ("r-s4vectors" ,r-s4vectors)
       ("r-snpstats" ,r-snpstats)
       ("r-summarizedexperiment" ,r-summarizedexperiment)
       ("r-variantannotation" ,r-variantannotation)))
    (home-page "https://bioconductor.org/packages/gwascat")
    (synopsis "Tools for data in the EMBL-EBI GWAS catalog")
    (description
     "This package provides tools for representing and modeling data in the
EMBL-EBI GWAS catalog.")
    (license license:artistic2.0)))

(define-public r-qvalue
  (package
    (name "r-qvalue")