From 2d7308967648486ce8ba724914a1ef89b6142e95 Mon Sep 17 00:00:00 2001 From: Sharlatan Hellseher Date: Wed, 7 Jan 2026 13:45:18 +0000 Subject: [PATCH] gnu: python-scikit-survival: Update to 0.26.0. * gnu/packages/python-science.scm (python-scikit-survival): Update to 0.26.0. [native-inputs]: Add python-pytest-xdist. Change-Id: If92ba627c894cb65976b7687062e738656b06e96 Signed-off-by: Rutherther --- gnu/packages/python-science.scm | 22 ++++++++++++---------- 1 file changed, 12 insertions(+), 10 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 149a8855da0921eb2e4d988cb9ff7579f64e8bd3..e4bad92e82d4c415370ca2a793a83253aeaa5b19 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -3215,28 +3215,29 @@ the following purposes in mind: (license license:bsd-3))) (define-public python-scikit-survival - (let ((revision "0") - ;; We need a later commit for support of a more recent sklearn and - ;; NumPy 2. - (commit "bc4a8914e8337c3be1b98371a3c26382696215a9")) (package (name "python-scikit-survival") - (version (git-version "0.25.0" revision commit)) + (version "0.26.0") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/sebp/scikit-survival") - (commit commit) - ;; This package contains a copy of Eigen. It would be good to - ;; figure out how to use our own Eigen package. + (commit (string-append "v" version)) + ;; TODO: This package contains a copy of Eigen in + ;; sksurv/linear_model/src. It would be good to figure out + ;; how to use our own Eigen package. (recursive? #true))) (file-name (git-file-name name version)) (sha256 - (base32 "001w73sz55vszp18h25dha74r34bbfzl02yh4d6zbli9zvr36hy4")))) + (base32 "0r0xi9saz247ph6bgrc3iknq0m60d8rs4sl4mdv4s1zja80w1cp8")))) (build-system pyproject-build-system) (arguments (list + ;; tests: 1013 passed, 105 warnings + #:test-flags + #~(list "--durations=10" ;to help in spotting long running tests + "--numprocesses" (number->string (min 4 (parallel-job-count)))) #:phases #~(modify-phases %standard-phases (add-before 'build 'set-version @@ -3256,6 +3257,7 @@ the following purposes in mind: (list python-cython python-packaging python-pytest + python-pytest-xdist python-setuptools python-setuptools-scm)) (home-page "https://github.com/sebp/scikit-survival") @@ -3264,7 +3266,7 @@ the following purposes in mind: built on top of scikit-learn. It allows doing survival analysis while utilizing the power of scikit-learn, e.g., for pre-processing or doing cross-validation.") - (license license:gpl3+)))) + (license license:gpl3+))) (define-public python-scipy (package