~ruther/guix-local

201d30fb4fc6af098b26e6711eed9945a6aaa421 — Sharlatan Hellseher 1 year, 1 month ago fdf07c1 
gnu: python-pandera: Fix tests.

* gnu/packages/python-science.scm (python-pandera) [source] <snippet>:
Remove tests deletion and ignore them with pytest options which are
working now.
[arguments] <test-flags> Skip some more tests; run tests in parallel up
to 8 thread, supported upstream.
[propagated-inputs]: Remove python-hypothesis; add
python-hypothesis-next and python-modin.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I45482203519ceb2208a330d91c07d12b65e6ee53
patch browse .tar.gz 
1 files changed, 33 insertions(+), 21 deletions(-)

M gnu/packages/python-science.scm

M gnu/packages/python-science.scm => gnu/packages/python-science.scm +33 -21
@@ 1995,6 1995,8 @@ idea of the remaining amount of computation to be done.")
(define-public python-pandera
  (package
    (name "python-pandera")
    ;; FIXME: The latest version requires hypothesis >= 6.92.7, which can't be
    ;; picked from python-hypothesis-next for some reason.
    (version "0.18.0")
    (source
     (origin


@@ 2005,34 2007,43 @@ idea of the remaining amount of computation to be done.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
        (base32 "14b5aij5zjkwvsimg0v00qvp59mhhq7ljim4qghcn432vkg9gh47"))
       (modules '((guix build utils)))
       ;; These tests require PySpark and Modin. We need to remove the entire
       ;; directory, since the conftest.py in these directories contain
       ;; imports.  (See: https://github.com/pytest-dev/pytest/issues/7452)
       (snippet '(begin
                   (delete-file-recursively "tests/pyspark")
                   (delete-file-recursively "tests/modin")))))
        (base32 "14b5aij5zjkwvsimg0v00qvp59mhhq7ljim4qghcn432vkg9gh47"))))
    (build-system pyproject-build-system)
    (arguments
     (list
      #:test-flags '(list "-k"
                          (string-append
                           ;; Mypy functionality is experimental and relying
                           ;; on pandas-stubs can lead to false
                           ;; positives. These tests currently fail.
                           "not test_python_std_list_dict_generics"
                           " and not test_python_std_list_dict_empty_and_none"
                           " and not test_pandas_modules_importable"
                           " and not test_check_groups"
                           ;; This is a test failure due to unexpected error
                           ;; message format.  It is harmless.
                           " and not test_pandas_stubs_false_positives"))))
      #:test-flags
      #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
              "--ignore=tests/pyspark"
              "-k" (string-join
                    ;; Failed: DID NOT RAISE <class 'pandera.errors.SchemaError'>
                    (list "not test_from_records_validates_the_schema"
                          "test_init_pandas_dataframe_errors"
                          "test_schema_dtype_crs_without_coerce"
                          "test_schema_from_dataframe"
                          "test_schema_model"
                          "test_validate_coerce_on_init"
                          ;; multimethod.DispatchError: ('str_length: 0
                          ;; methods found', (<class
                          ;; 'pandas.core.series.Series'>, <class 'NoneType'>,
                          ;; <class 'int'>), [])
                          "test_succeeding"
                          "test_failing"
                          "test_failing_with_none"
                          ;; pandera.errors.SchemaError: Error while executing
                          ;; check function: KeyError("foo")
                          "test_check_groups"
                          ;; [pandas_series.py-plugin_mypy.ini-expected_errors13]
                          ;; - assert 1 == 2
                          "test_pandas_stubs_false_positives"
                          ;; TypeError: type 'Series' is not subscriptable
                          "test_pandas_modules_importable")
                    " and not "))))
    ;; Pandera comes with a lot of extras. We test as many as possible, but do
    ;; not include all of them in the propagated-inputs. Currently, we have to
    ;; skip the pyspark and io tests due to missing packages python-pyspark
    ;; and python-frictionless.
    (propagated-inputs (list python-hypothesis ;strategies extra
    (propagated-inputs (list python-hypothesis-next ;strategies extra
                             python-modin
                             python-multimethod
                             python-numpy
                             python-packaging


@@ 2049,6 2060,7 @@ idea of the remaining amount of computation to be done.")
                         python-pyarrow ;needed to run fastapi tests
                         python-pytest
                         python-pytest-asyncio
                         python-pytest-xdist
                         python-setuptools
                         python-sphinx
                         python-uvicorn ;needed to run fastapi tests