@@ 10473,6 10473,106 @@ controlled sockets
any arbitrary astrometric projection defined in the WCS standard.")
(license license:gpl3+)))
+(define-public tangos
+ (package
+ (name "tangos")
+ (version "1.9.1") ;1.10.0+ requires python-pynbody 2+
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pynbody/tangos")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0vmjkhmqnr6abg7mybib1gllqbimv4ylgzvwxnsw0kk6cvv4qgl9"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; XXX: Full integration tests require running database, see projects
+ ;; CI, unit tests are quite compute instance.
+ ;;
+ ;; tests: 279 passed, 1 deselected, 105 warnings
+ #:test-flags
+ #~(list "--ignore=mpi_tests"
+ ;; OSError: File 'test_simulations/test_tipsy/tiny.000640':
+ ;; format not understood or does not exist
+ "--deselect=tests/test_bh_reader.py::test_bhlog")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'remove-broken-scripts
+ (lambda _
+ ;; TODO: Report upstram.
+ ;; I could not find "Simpy" module, see:
+ ;; - URL: <https://github.com/pynbody/tangos/commit>
+ ;; - commit: 7de987e27d756278c4571dc65f36d377027fa29d
+ ;; - comment: #commitcomment-167855052
+ (delete-file "tangos/scripts/preprocess_bh.py")
+ (substitute* "setup.py"
+ ;; ModuleNotFoundError: No module named
+ ;; 'tangos.scripts.bh_timelink'
+ ((".*tangos_bh_timelink =.*") "")
+ ;; It looks this script uses not a publicly available module:
+ ;; import Simpy.BlackHoles.orbit.
+ ((".*tangos_preprocess_bh =.*") "")))))))
+ (native-inputs
+ (list python-pymysql
+ python-pynbody
+ python-pyquery
+ python-pytest
+ python-setuptools
+ python-webtest
+ python-yt))
+ (inputs
+ (list python-hupper
+ python-matplotlib
+ python-more-itertools
+ python-numpy
+ python-packaging
+ python-pastedeploy
+ python-plaster
+ python-plaster-pastedeploy
+ python-pyparsing
+ python-pyramid
+ python-pyramid-debugtoolbar
+ python-pyramid-jinja2
+ python-pyramid-retry
+ python-pyramid-tm
+ python-repoze-lru
+ python-scipy
+ python-setuptools
+ python-sqlalchemy
+ python-tblib
+ python-tqdm
+ python-translationstring
+ python-venusian
+ python-waitress
+ python-webob
+ python-zope-deprecation
+ python-zope-interface
+ python-zope-sqlalchemy))
+ (home-page "https://github.com/pynbody/tangos")
+ (synopsis "Agile numerical galaxy organisation system")
+ (description
+ "TANGOS is a tool to build a database (along the lines of
+@url{http://icc.dur.ac.uk/Eagle/database.php, Eagle} or
+@url{https://www.cosmosim.org/cms/documentation/projects/multidark-bolshoi-project/,
+MultiDark}) for cosmological and zoom simulations.
+
+Features:
+@itemize
+@item designed to store and manage results from custom analysis code
+@item provides web and Python interfaces
+@item science-focussed queries across entire merger trees, without requiring
+any knowledge of SQL
+@item manages the process of populating the database with science data,
+including auto-parallelising custom analysis
+@item customization with multiple Python modules such as @code{pynbody} or
+@code{yt} to process raw simulation data
+@item suports file-based database SQLite, server-based MySQL and PostgreSQL
+@end itemize")
+ (license license:bsd-3)))
+
(define-public tempo
(package
(name "tempo")