~ruther/guix-local

1b83198655db556316ce29933504a8e5476bb3e6 — Sharlatan Hellseher 1 year, 5 months ago acbff09 
gnu: Add go-github-com-biogo-store.

This change merges all extracted subdirs under the same variable as it's
distributed in single module according to project's go.mod.

* gnu/packages/bioinformatics.scm (go-github-com-biogo-store-kdtree,
go-github-com-biogo-store-llrb, go-github-com-biogo-store-step):
Delete variables.

(go-github-com-biogo-store): New variable.
[arguments] <skip-build?>: No go files in project's root.
<import-path>: Set as seen in go.mod.

(go-github-com-biogo-biogo) [propagated-inputs]: Remove
go-github-com-biogo-store-kdtree, go-github-com-biogo-store-llrb, and
go-github-com-biogo-store-step. Add go-github-com-biogo-store.

Change-Id: I1db4efea31fc7f1f5e96b21e874a523cf631f370
patch browse .tar.gz 
1 files changed, 6 insertions(+), 44 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +6 -44
@@ 24338,9 24338,9 @@ for nanopore cDNA, native RNA, and PacBio sequencing reads.")
functions.")
    (license license:bsd-3)))

(define-public go-github-com-biogo-store-interval
(define-public go-github-com-biogo-store
  (package
    (name "go-github-com-biogo-store-interval")
    (name "go-github-com-biogo-store")
    (version "0.0.0-20201120204734-aad293a2328f")
    (source (origin
              (method git-fetch)


@@ 24353,8 24353,9 @@ functions.")
                "0skizrp1j6vgbl0g1kmh73picagqlvwckaqs0gkl6rai5lckxj8a"))))
    (build-system go-build-system)
    (arguments
     '(#:import-path "github.com/biogo/store/interval"
       #:unpack-path "github.com/biogo/store"))
     (list
      #:skip-build? #t
      #:import-path "github.com/biogo/store"))
    (propagated-inputs
     (list go-gopkg-in-check-v1
           go-github-com-kr-pretty))


@@ 24365,42 24366,6 @@ functions.")
useful for bioinformatic analysis.")
    (license license:bsd-3)))

(define-public go-github-com-biogo-store-kdtree
  (package
    (inherit go-github-com-biogo-store-interval)
    (name "go-github-com-biogo-store-kdtree")
    (arguments
     '(#:import-path "github.com/biogo/store/kdtree"
       #:unpack-path "github.com/biogo/store"))
    (propagated-inputs
     (list go-gopkg-in-check-v1
           go-github-com-kr-pretty))
    (synopsis "kdtree store type for biogo")))

(define-public go-github-com-biogo-store-llrb
  (package
    (inherit go-github-com-biogo-store-interval)
    (name "go-github-com-biogo-store-llrb")
    (arguments
     '(#:import-path "github.com/biogo/store/llrb"
       #:unpack-path "github.com/biogo/store"))
    (propagated-inputs
     (list go-gopkg-in-check-v1
           go-github-com-kr-pretty))
    (synopsis "LLRB store for biogo")))

(define-public go-github-com-biogo-store-step
  (package
    (inherit go-github-com-biogo-store-interval)
    (name "go-github-com-biogo-store-step")
    (arguments
     '(#:import-path "github.com/biogo/store/step"
       #:unpack-path "github.com/biogo/store"))
    (propagated-inputs
     (list go-gopkg-in-check-v1
           go-github-com-kr-pretty))
    (synopsis "Step store for biogo")))

(define-public go-github-com-biogo-hts
  (package
    (name "go-github-com-biogo-hts")


@@ 24451,10 24416,7 @@ CSIv1, CSIv2 and FAI files.")
     '(#:import-path "github.com/biogo/biogo"))
    (propagated-inputs
     (list go-gopkg-in-check-v1
           go-github-com-biogo-store-interval
           go-github-com-biogo-store-kdtree
           go-github-com-biogo-store-llrb
           go-github-com-biogo-store-step
           go-github-com-biogo-store
           go-github-com-biogo-hts
           go-github-com-biogo-graph))
    (home-page "https://github.com/biogo/biogo")