@@ 5150,16 5150,127 @@ and aims to provide a similar API and functionality in Python.")
(name "python-pyvista")
(version "0.44.2")
(source
- ;; The PyPI tarball does not contain the tests.
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/pyvista/pyvista")
- (commit (string-append "v" version))))
+ (url "https://github.com/pyvista/pyvista")
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0lnh4cvf6wld7hm293015d80ny0vnsk96ckfvc2crzd1b79ch1v5"))))
(build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; tests: 5891 passed, 623 skipped, 355 deselected, 3 xfailed, 167 warnings
+ #:test-flags
+ ;; TODO: Find out what's going on with skipped tests.
+ #~(list "--ignore=tests/plotting/test_charts.py"
+ "--ignore=tests/examples/test_download_files.py"
+ "--ignore=tests/examples/test_downloads.py"
+ "--ignore=tests/plotting/test_texture.py"
+ "-k" (string-join
+ (list "not test_actor_texture"
+ "test_add_multiple"
+ "test_add_timer_event"
+ "test_avsucd_reader"
+ "test_binarymarchingcubesreader"
+ "test_bmpreader"
+ "test_box_axes"
+ "test_byureader"
+ "test_cast_to_numpy_raises"
+ "test_compute_boundary_mesh_quality"
+ "test_connectivity_"
+ "test_dataset_loader_cubemap"
+ "test_dataset_loader_dicom"
+ "test_dataset_loader_from_nested_files_and_directory"
+ "test_dataset_loader_from_nested_multiblock"
+ "test_dataset_loader_one_file"
+ "test_dataset_loader_two_files_both_loadable"
+ "test_dataset_loader_two_files_one_loadable"
+ "test_dcmreader"
+ "test_demreader"
+ "test_ensight_multi_block_io"
+ "test_ensightreader_arrays"
+ "test_ensightreader_time_sets"
+ "test_ensightreader_timepoints"
+ "test_facetreader"
+ "test_fluentcffreader"
+ "test_gambitreader"
+ "test_gaussian_cubes_reader"
+ "test_gesignareader"
+ "test_gif_reader"
+ "test_hdf_reader"
+ "test_hdr_reader"
+ "test_init_cmap"
+ "test_interpolate"
+ "test_jpegreader"
+ "test_legend_"
+ "test_load_dataset_no_reader"
+ "test_load_theme"
+ "test_meta_image_reader"
+ "test_multiblockplot3dreader"
+ "test_nifti_reader"
+ "test_nrrd_reader"
+ "test_objreader"
+ "test_only_screenshots_flag"
+ "test_openfoam_case_type"
+ "test_openfoam_cell_to_point_default"
+ "test_openfoam_patch_arrays"
+ "test_openfoam_skip_zero_time"
+ "test_openfoamreader_active_time"
+ "test_openfoamreader_arrays_time"
+ "test_openfoamreader_read_data_time_point"
+ "test_openfoamreader_read_data_time_value"
+ "test_particle_reader"
+ "test_partition"
+ "test_pdbreader"
+ "test_plot3dmetareader"
+ "test_plot_return_img_with_cpos"
+ "test_plot_return_img_without_cpos"
+ "test_png_reader"
+ "test_pnm_reader"
+ "test_prostar_reader"
+ "test_protein_ribbon"
+ "test_pvdreader"
+ "test_pvdreader_no_part_group"
+ "test_pvdreader_no_time_group"
+ "test_read_cgns"
+ "test_repr"
+ "test_save_before_close_callback"
+ "test_slc_reader"
+ "test_stlreader"
+ "test_tecplotreader"
+ "test_tiff_reader"
+ "test_timer"
+ "test_translate_direction_collinear"
+ "test_user_logo"
+ "test_xdmf_reader")
+ " and not "))
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; vtk check fails in sanity-check, comment out
+ (add-after 'unpack 'patch-pyproject
+ (lambda _
+ (substitute* "pyproject.toml"
+ (("'vtk<9\\.4\\.0'," all) (string-append "#" all)))))
+ (add-after 'unpack 'fix-failing-tests
+ (lambda _
+ (substitute* "tests/plotting/test_plotting.py"
+ (("\"\"\"Determine if using mesa.\"\"\"" all)
+ (string-append all "\n return False")))
+ (substitute* "tests/test_meshio.py"
+ (("cow = .*$" all) (string-append "#" all "\n"))
+ ((", cow") ""))))
+ ;; test phase writes files to $HOME
+ (add-before 'check 'redirect-HOME
+ (lambda _
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list python-ipython
+ python-pytest
+ python-scipy
+ python-tqdm
+ python-trimesh))
(propagated-inputs
(list python-imageio
python-matplotlib
@@ 5169,127 5280,6 @@ and aims to provide a similar API and functionality in Python.")
python-pooch
python-scooby
vtk))
- ;; packages needed for testing
- (native-inputs (list python-pytest
- python-scipy
- python-ipython
- python-trimesh
- python-tqdm))
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- ;; vtk check fails in sanity-check, comment out
- (add-after 'unpack 'patch-pyproject
- (lambda _
- (substitute* "pyproject.toml"
- (("'vtk<9\\.4\\.0'," all) (string-append "#" all)))))
- (add-after 'unpack 'fix-failing-tests
- (lambda _
- (rename-file "tests/plotting/test_charts.py" "tests/plotting/_test_charts.py")
- (rename-file "tests/examples/test_download_files.py" "tests/examples/_test_download_files.py")
- (rename-file "tests/examples/test_downloads.py" "tests/examples/_test_downloads.py")
- (rename-file "tests/plotting/test_texture.py" "tests/plotting/_test_texture.py")
- (substitute* "tests/plotting/test_plotting.py"
- (("\"\"\"Determine if using mesa.\"\"\"" all)
- (string-append all "\n return False")))
- (substitute* "tests/test_meshio.py"
- (("cow = .*$" all) (string-append "#" all "\n"))
- ((", cow") ""))
- (substitute* "tests/core/test_dataset.py"
- (("test_partition") "_test_partition"))
- (substitute* "tests/core/test_composite.py"
- (("test_ensight_multi_block_io") "_test_ensight_multi_block_io"))
- (substitute* "tests/core/test_dataset_filters.py"
- (("test_connectivity_.*$" all) (string-append "_" all))
- (("test_compute_boundary_mesh_quality") "_test_compute_boundary_mesh_quality"))
- (substitute* "tests/core/test_polydata_filters.py"
- (("test_protein_ribbon") "_test_protein_ribbon"))
- (substitute* "tests/core/test_validation.py"
- (("test_cast_to_numpy_raises") "_test_cast_to_numpy_raises"))
- (substitute* "tests/plotting/test_actor.py"
- (("test_actor_texture") "_test_actor_texture"))
- (substitute* "tests/plotting/test_lookup_table.py"
- (("test_init_cmap") "_test_init_cmap")
- (("test_repr") "_test_repr"))
- (substitute* "tests/plotting/test_plotter.py"
- (("test_add_multiple") "_test_add_multiple")
- (("test_plot_return_img_without_cpos") "_test_plot_return_img_without_cpos")
- (("test_plot_return_img_with_cpos") "_test_plot_return_img_with_cpos")
- (("test_only_screenshots_flag") "_test_only_screenshots_flag"))
- (substitute* "tests/plotting/test_plotting_utilities.py"
- (("test_gif_reader") "_test_gif_reader"))
- (substitute* "tests/plotting/test_render_window_interactor.py"
- (("test_timer") "_test_timer")
- (("test_add_timer_event") "_test_add_timer_event")
- (("test_interpolate") "_test_interpolate"))
- (substitute* "tests/plotting/test_renderer.py"
- (("test_legend_.*$" all) (string-append "_" all)))
- (substitute* "tests/plotting/test_theme.py"
- (("test_box_axes") "_test_box_axes")
- (("test_load_theme") "_test_load_theme")
- (("test_save_before_close_callback") "_test_save_before_close_callback")
- (("test_user_logo") "_test_user_logo"))
- (substitute* "tests/core/test_geometric_sources.py"
- (("test_translate_direction_collinear") "_test_translate_direction_collinear"))
- (substitute* "tests/examples/test_dataset_loader.py"
- (("test_dataset_loader_one_file") "_test_dataset_loader_one_file")
- (("test_dataset_loader_two_files_one_loadable") "_test_dataset_loader_two_files_one_loadable")
- (("test_dataset_loader_two_files_both_loadable") "_test_dataset_loader_two_files_both_loadable")
- (("test_dataset_loader_cubemap") "_test_dataset_loader_cubemap")
- (("test_dataset_loader_dicom") "_test_dataset_loader_dicom")
- (("test_dataset_loader_from_nested_files_and_directory") "_test_dataset_loader_from_nested_files_and_directory")
- (("test_dataset_loader_from_nested_multiblock") "_test_dataset_loader_from_nested_multiblock")
- (("test_load_dataset_no_reader") "_test_load_dataset_no_reader"))
- (substitute* "tests/core/test_reader.py"
- (("test_ensightreader_arrays") "_test_ensightreader_arrays")
- (("test_ensightreader_timepoints") "_test_ensightreader_timepoints")
- (("test_ensightreader_time_sets") "_test_ensightreader_time_sets")
- (("test_dcmreader") "_test_dcmreader")
- (("test_objreader") "_test_objreader")
- (("test_stlreader") "_test_stlreader")
- (("test_tecplotreader") "_test_tecplotreader")
- (("test_byureader") "_test_byureader")
- (("test_facetreader") "_test_facetreader")
- (("test_plot3dmetareader") "_test_plot3dmetareader")
- (("test_multiblockplot3dreader") "_test_multiblockplot3dreader")
- (("test_binarymarchingcubesreader") "_test_binarymarchingcubesreader")
- (("test_pvdreader") "_test_pvdreader")
- (("test_pvdreader_no_time_group") "_test_pvdreader_no_time_group")
- (("test_pvdreader_no_part_group") "_test_pvdreader_no_part_group")
- (("test_openfoamreader_arrays_time") "_test_openfoamreader_arrays_time")
- (("test_openfoamreader_active_time") "_test_openfoamreader_active_time")
- (("test_openfoamreader_read_data_time_value") "_test_openfoamreader_read_data_time_value")
- (("test_openfoamreader_read_data_time_point") "_test_openfoamreader_read_data_time_point")
- (("test_openfoam_skip_zero_time") "_test_openfoam_skip_zero_time")
- (("test_openfoam_cell_to_point_default") "_test_openfoam_cell_to_point_default")
- (("test_openfoam_patch_arrays") "_test_openfoam_patch_arrays")
- (("test_openfoam_case_type") "_test_openfoam_case_type")
- (("test_read_cgns") "_test_read_cgns")
- (("test_bmpreader") "_test_bmpreader")
- (("test_demreader") "_test_demreader")
- (("test_jpegreader") "_test_jpegreader")
- (("test_meta_image_reader") "_test_meta_image_reader")
- (("test_nifti_reader") "_test_nifti_reader")
- (("test_nrrd_reader") "_test_nrrd_reader")
- (("test_png_reader") "_test_png_reader")
- (("test_pnm_reader") "_test_pnm_reader")
- (("test_slc_reader") "_test_slc_reader")
- (("test_tiff_reader") "_test_tiff_reader")
- (("test_hdr_reader") "_test_hdr_reader")
- (("test_avsucd_reader") "_test_avsucd_reader")
- (("test_hdf_reader") "_test_hdf_reader")
- (("test_xdmf_reader") "_test_xdmf_reader")
- (("test_fluentcffreader") "_test_fluentcffreader")
- (("test_gambitreader") "_test_gambitreader")
- (("test_gaussian_cubes_reader") "_test_gaussian_cubes_reader")
- (("test_gesignareader") "_test_gesignareader")
- (("test_pdbreader") "_test_pdbreader")
- (("test_particle_reader") "_test_particle_reader")
- (("test_prostar_reader") "_test_prostar_reader"))))
- ;; test phase writes files to $HOME
- (add-before 'check 'redirect-HOME
- (lambda _
- (setenv "HOME" "/tmp"))))))
(home-page "https://docs.pyvista.org/")
(synopsis "3D plotting and mesh analysis through VTK")
(description