@@ 1922,6 1922,34 @@ Applications} formats (such as @file{.image} datasets). This implementation
is independent of and does not use @code{casacore}.")
(license license:lgpl2.0)))
+(define-public python-ccdproc
+ (package
+ (name "python-ccdproc")
+ (version "2.4.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "ccdproc" version))
+ (sha256
+ (base32 "14faivm9nihpdwzg0jx1c9zr7jk22gjfjw78raq6h63ypl10i6yx"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-memory-profiler
+ python-pytest-astropy))
+ (propagated-inputs
+ (list python-astropy
+ python-astroscrappy
+ python-numpy
+ python-reproject
+ python-scikit-image
+ python-scipy))
+ (home-page "http://ccdproc.readthedocs.io/")
+ (synopsis "Basic data reductions of CCD images")
+ (description "The ccdproc package provides many of the necessary tools for
+processing of CCD images built on a framework to provide error propagation and
+bad pixel tracking throughout the reduction process.")
+ (license license:bsd-3)))
+
(define-public python-coolest
(package
(name "python-coolest")
@@ 2383,6 2411,43 @@ across many files.")
(description "Multidimensional data visualization across files.")
(license license:bsd-3)))
+(define-public python-gwcs
+ (package
+ (name "python-gwcs")
+ (version "0.21.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "gwcs" version))
+ (sha256
+ (base32 "1fn5l4v236bl7xqi1is40c2q57dji8by98iwqcndfnmjwqf7zllc"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-jsonschema
+ python-jmespath
+ python-pytest
+ python-pytest-doctestplus
+ python-pyyaml
+ python-setuptools-scm))
+ (propagated-inputs
+ (list python-asdf
+ python-asdf-astropy
+ python-asdf-wcs-schemas
+ python-astropy
+ python-numpy
+ python-scipy))
+ (home-page "https://gwcs.readthedocs.io/en/latest/")
+ (synopsis "Generalized World Coordinate System")
+ (description "Generalized World Coordinate System (GWCS) is an Astropy
+affiliated package providing tools for managing the World Coordinate System of
+astronomical data.
+
+GWCS takes a general approach to the problem of expressing transformations
+between pixel and world coordinates. It supports a data model which includes
+the entire transformation pipeline from input coordinates (detector by
+default) to world coordinates.")
+ (license license:bsd-3)))
+
(define-public python-halotools
(package
(name "python-halotools")
@@ 3508,34 3573,6 @@ be as fast as possible so some of the readability has been sacrificed,
specifically in the C code.")
(license license:bsd-3)))
-(define-public python-ccdproc
- (package
- (name "python-ccdproc")
- (version "2.4.2")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "ccdproc" version))
- (sha256
- (base32 "14faivm9nihpdwzg0jx1c9zr7jk22gjfjw78raq6h63ypl10i6yx"))))
- (build-system pyproject-build-system)
- (native-inputs
- (list python-memory-profiler
- python-pytest-astropy))
- (propagated-inputs
- (list python-astropy
- python-astroscrappy
- python-numpy
- python-reproject
- python-scikit-image
- python-scipy))
- (home-page "http://ccdproc.readthedocs.io/")
- (synopsis "Basic data reductions of CCD images")
- (description "The ccdproc package provides many of the necessary tools for
-processing of CCD images built on a framework to provide error propagation and
-bad pixel tracking throughout the reduction process.")
- (license license:bsd-3)))
-
(define-public python-cdflib
(package
(name "python-cdflib")
@@ 3817,6 3854,163 @@ implemented using the astropy.modeling framework.")
@url{Helioviewer API, https://api.helioviewer.org/docs/v2/}.")
(license license:bsd-2)))
+(define-public python-jplephem
+ (package
+ (name "python-jplephem")
+ (version "2.22")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "jplephem" version))
+ (sha256
+ (base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
+ (native-inputs
+ (list python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-numpy))
+ (home-page "https://github.com/brandon-rhodes/python-jplephem")
+ (synopsis "Python version of NASA DE4xx ephemerides")
+ (description
+ "@code{skyfield} computes positions for the stars, planets, and
+satellites in orbit around the Earth. Its results should agree with the
+positions generated by the United States Naval Observatory and their
+Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
+milliarcsecond).")
+ (license license:expat)))
+
+(define-public python-jwst
+ (package
+ (name "python-jwst")
+ (version "1.16.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "jwst" version))
+ (sha256
+ (base32
+ "1bqfgqp4gdm1ky5dvzhzpgygwr710h4mbykp5sb9aw3cw9jg1bk7"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; Replace reference to external configobj.
+ (substitute* (find-files "." "\\.py$")
+ (("from astropy.extern import configobj") "import configobj")
+ (("from astropy.extern.configobj import validate") "import validate")
+ (("from astropy.extern.configobj.configobj import ") "from configobj import ")
+ (("from astropy.extern.configobj.validate import ") "from validate import "))))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; XXX: Tests require access to https://jwst-crds-pub.stsci.edu server for
+ ;; getting data sets.
+ #:tests? #f
+ #:phases #~(modify-phases %standard-phases
+ ;; NOTE: (Sharlatan-20230529T113448+0100): opencv-python's
+ ;; version can't be detected, it could the way it's packed in
+ ;; Guix. Review failing sanity check with more efforts,
+ ;; disable for now to make package buildable.
+ (delete 'sanity-check))))
+ ;; opencv provides OpenCV-Python which is Listed as install requirement.
+ (propagated-inputs (list opencv
+ python-asdf
+ python-asdf-astropy
+ python-astropy
+ python-bayesicfitting
+ python-crds
+ python-drizzle
+ python-gwcs
+ python-importlib-metadata
+ python-jplephem
+ python-jsonschema
+ python-numpy
+ python-packaging
+ python-photutils
+ python-poppy
+ python-psutil
+ python-pyparsing
+ python-pysiaf
+ python-requests
+ python-scikit-image
+ python-scipy
+ python-spherical-geometry
+ python-stcal
+ python-stdatamodels
+ python-stpipe
+ python-stsci-image
+ python-stsci-imagestats
+ python-synphot
+ python-tweakwcs
+ python-wiimatch))
+ (native-inputs (list python-colorama
+ python-pytest
+ python-pytest-cov
+ python-pytest-doctestplus
+ python-pytest-openfiles
+ python-requests-mock
+ ;; python-ruff ; not packed yet in Guix
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (home-page "https://jwst-pipeline.readthedocs.io/en/latest/")
+ (synopsis
+ "Python library for science observations from the James Webb Space Telescope")
+ (description
+ "This package provides an access to the JWST Science Calibration Pipeline
+processes data from all JWST instruments and observing modes by applying various
+science corrections sequentially, producing both fully-calibrated individual
+exposures and high-level data products (mosaics, extracted spectra, etc.).")
+ (license license:bsd-3)))
+
+(define-public python-jwst-reffiles
+ (package
+ (name "python-jwst-reffiles")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "jwst_reffiles" version))
+ (sha256
+ (base32 "1dlw955cw49qczdmimglmlcbal8vd3wbv5j48ckllvjgd59pwr3s"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; FIXME: Invistigate why it failes on python-jwst side where the
+ ;; python-tweakwcs is built just fine:
+ ;;
+ ;; <...>/tweakwcs/matchutils.py:18: in <module>
+ ;; from stsci.stimage import xyxymatch
+ ;; E ModuleNotFoundError: No module named 'stsci.stimage'
+ #:tests? #f
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'sanity-check))))
+ (propagated-inputs
+ (list python-astropy
+ python-jwst
+ python-matplotlib
+ python-numpy
+ python-scipy))
+ (native-inputs
+ (list python-pytest
+ python-stsci-stimage))
+ (home-page "https://github.com/spacetelescope/jwst_reffiles")
+ (synopsis "Tool for JWST's CRDS-formatted reference files creation")
+ (description
+ "This package provides a tool to create @acronym{Calibration References
+Data System,CRDS}-formatted reference files for @acronym{James Webb Space
+Telescope,JWST} from a set of input dark current files and a set of flat field
+files.")
+ (license license:bsd-3)))
+
(define-public python-kanon
(package
(name "python-kanon")
@@ 5254,163 5448,6 @@ PYSYNPHOT, utilizing Astropy covering instrument specific portions of the old
packages for HST.")
(license license:bsd-3)))
-(define-public python-jplephem
- (package
- (name "python-jplephem")
- (version "2.22")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "jplephem" version))
- (sha256
- (base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
- (native-inputs
- (list python-setuptools
- python-wheel))
- (propagated-inputs
- (list python-numpy))
- (home-page "https://github.com/brandon-rhodes/python-jplephem")
- (synopsis "Python version of NASA DE4xx ephemerides")
- (description
- "@code{skyfield} computes positions for the stars, planets, and
-satellites in orbit around the Earth. Its results should agree with the
-positions generated by the United States Naval Observatory and their
-Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
-milliarcsecond).")
- (license license:expat)))
-
-(define-public python-jwst
- (package
- (name "python-jwst")
- (version "1.16.1")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "jwst" version))
- (sha256
- (base32
- "1bqfgqp4gdm1ky5dvzhzpgygwr710h4mbykp5sb9aw3cw9jg1bk7"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; Replace reference to external configobj.
- (substitute* (find-files "." "\\.py$")
- (("from astropy.extern import configobj") "import configobj")
- (("from astropy.extern.configobj import validate") "import validate")
- (("from astropy.extern.configobj.configobj import ") "from configobj import ")
- (("from astropy.extern.configobj.validate import ") "from validate import "))))))
- (build-system pyproject-build-system)
- (arguments
- (list
- ;; XXX: Tests require access to https://jwst-crds-pub.stsci.edu server for
- ;; getting data sets.
- #:tests? #f
- #:phases #~(modify-phases %standard-phases
- ;; NOTE: (Sharlatan-20230529T113448+0100): opencv-python's
- ;; version can't be detected, it could the way it's packed in
- ;; Guix. Review failing sanity check with more efforts,
- ;; disable for now to make package buildable.
- (delete 'sanity-check))))
- ;; opencv provides OpenCV-Python which is Listed as install requirement.
- (propagated-inputs (list opencv
- python-asdf
- python-asdf-astropy
- python-astropy
- python-bayesicfitting
- python-crds
- python-drizzle
- python-gwcs
- python-importlib-metadata
- python-jplephem
- python-jsonschema
- python-numpy
- python-packaging
- python-photutils
- python-poppy
- python-psutil
- python-pyparsing
- python-pysiaf
- python-requests
- python-scikit-image
- python-scipy
- python-spherical-geometry
- python-stcal
- python-stdatamodels
- python-stpipe
- python-stsci-image
- python-stsci-imagestats
- python-synphot
- python-tweakwcs
- python-wiimatch))
- (native-inputs (list python-colorama
- python-pytest
- python-pytest-cov
- python-pytest-doctestplus
- python-pytest-openfiles
- python-requests-mock
- ;; python-ruff ; not packed yet in Guix
- python-setuptools
- python-setuptools-scm
- python-wheel))
- (home-page "https://jwst-pipeline.readthedocs.io/en/latest/")
- (synopsis
- "Python library for science observations from the James Webb Space Telescope")
- (description
- "This package provides an access to the JWST Science Calibration Pipeline
-processes data from all JWST instruments and observing modes by applying various
-science corrections sequentially, producing both fully-calibrated individual
-exposures and high-level data products (mosaics, extracted spectra, etc.).")
- (license license:bsd-3)))
-
-(define-public python-jwst-reffiles
- (package
- (name "python-jwst-reffiles")
- (version "1.0.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "jwst_reffiles" version))
- (sha256
- (base32 "1dlw955cw49qczdmimglmlcbal8vd3wbv5j48ckllvjgd59pwr3s"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- ;; FIXME: Invistigate why it failes on python-jwst side where the
- ;; python-tweakwcs is built just fine:
- ;;
- ;; <...>/tweakwcs/matchutils.py:18: in <module>
- ;; from stsci.stimage import xyxymatch
- ;; E ModuleNotFoundError: No module named 'stsci.stimage'
- #:tests? #f
- #:phases
- #~(modify-phases %standard-phases
- (delete 'sanity-check))))
- (propagated-inputs
- (list python-astropy
- python-jwst
- python-matplotlib
- python-numpy
- python-scipy))
- (native-inputs
- (list python-pytest
- python-stsci-stimage))
- (home-page "https://github.com/spacetelescope/jwst_reffiles")
- (synopsis "Tool for JWST's CRDS-formatted reference files creation")
- (description
- "This package provides a tool to create @acronym{Calibration References
-Data System,CRDS}-formatted reference files for @acronym{James Webb Space
-Telescope,JWST} from a set of input dark current files and a set of flat field
-files.")
- (license license:bsd-3)))
-
(define-public python-pyerfa
(package
(name "python-pyerfa")
@@ 6135,43 6172,6 @@ System (WCS) tags. Users should not need to install this directly; instead,
install an implementation package such as gwcs.")
(license license:bsd-3)))
-(define-public python-gwcs
- (package
- (name "python-gwcs")
- (version "0.21.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "gwcs" version))
- (sha256
- (base32 "1fn5l4v236bl7xqi1is40c2q57dji8by98iwqcndfnmjwqf7zllc"))))
- (build-system pyproject-build-system)
- (native-inputs
- (list python-jsonschema
- python-jmespath
- python-pytest
- python-pytest-doctestplus
- python-pyyaml
- python-setuptools-scm))
- (propagated-inputs
- (list python-asdf
- python-asdf-astropy
- python-asdf-wcs-schemas
- python-astropy
- python-numpy
- python-scipy))
- (home-page "https://gwcs.readthedocs.io/en/latest/")
- (synopsis "Generalized World Coordinate System")
- (description "Generalized World Coordinate System (GWCS) is an Astropy
-affiliated package providing tools for managing the World Coordinate System of
-astronomical data.
-
-GWCS takes a general approach to the problem of expressing transformations
-between pixel and world coordinates. It supports a data model which includes
-the entire transformation pipeline from input coordinates (detector by
-default) to world coordinates.")
- (license license:bsd-3)))
-
(define-public python-rad
(package
(name "python-rad")