~ruther/guix-local

14ab247eceb63ae48c97a778fbaf4842b06c595f — Hugo Buddelmeijer 2 months ago 2ede88e 
gnu: python-mappy: Switch to pyproject.

* gnu/packages/bioinformatics.scm (python-mappy):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#test-backend, #test-flags>: Replace check phase with
example (no tests).
[native-inputs]: Add python-setuptools.

Change-Id: I9561de7e0ee94dbd1134c23c608d262169407456
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
patch browse .tar.gz 
1 files changed, 19 insertions(+), 8 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +19 -8
@@ 18689,15 18689,26 @@ cases include:
  (package
   (name "python-mappy")
   (version "2.24")
   (source (origin
            (method url-fetch)
            (uri (pypi-uri "mappy" version))
            (sha256
             (base32
              "1ycszza87p9qvx8mis9v1hry0ac465x1xcxbsn1k45qlxxrzp8im"))))
   (build-system python-build-system)
   (source
    (origin
      (method git-fetch)
      (uri (git-reference
             (url "https://github.com/lh3/minimap2")
             (commit (string-append "v" version))))
      (file-name (git-file-name name version))
      (sha256
       (base32 "0k658659ivxk2xnyawrfqdhcji6a3xcqdr5a9r5myzb2ivypnjmh"))))
   (build-system pyproject-build-system)
    (arguments
     (list
      #:test-backend #~'custom
      #:test-flags
      #~(list "-c" (string-append "import mappy;"
                                 " print(mappy.revcomp("
                                 "mappy.Aligner('test/MT-human.fa')"
                                 ".seq('MT_human', 100, 200)))"))))
   (native-inputs
    (list python-cython))
    (list python-cython python-setuptools))
   (inputs
    (list zlib))
   (home-page "https://github.com/lh3/minimap2")