~ruther/guix-local

06e372360eed08a1cbbb2081a591fbfa4785a2f2 — Ben Woodcroft 8 years ago d6e63cf 
gnu: bowtie: Use 'modify-phases'.

* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Use 'modify-phases'
syntax.
patch browse .tar.gz 
1 files changed, 8 insertions(+), 10 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +8 -10
@@ 1225,16 1225,14 @@ errors at the end of reads.")
             "WITH_TBB=1"
             (string-append "prefix=" (assoc-ref %outputs "out")))
       #:phases
       (alist-delete
        'configure
        (alist-replace
         'check
         (lambda* (#:key outputs #:allow-other-keys)
           (system* "perl"
                    "scripts/test/simple_tests.pl"
                    "--bowtie2=./bowtie2"
                    "--bowtie2-build=./bowtie2-build"))
         %standard-phases))))
       (modify-phases %standard-phases
         (delete 'configure)
         (replace 'check
           (lambda* (#:key outputs #:allow-other-keys)
             (zero? (system* "perl"
                             "scripts/test/simple_tests.pl"
                             "--bowtie2=./bowtie2"
                             "--bowtie2-build=./bowtie2-build")))))))
    (home-page "http://bowtie-bio.sourceforge.net/bowtie2/index.shtml")
    (synopsis "Fast and sensitive nucleotide sequence read aligner")
    (description